Genomic Location: Scaffold0035:239607...260258
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families
| CDS |
| ABFA07_004168 |
| Transcript |
| rna-g4269.t1 |
| Protein |
| KAM7447623.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000825 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07974 all species → | EGF_2 | EGF-like domain | Domain | Interproscan |
| PF08742 all species → | C8 | C8 domain | Domain | Interproscan |
| PF05375 all species → | Pacifastin_I | Pacifastin inhibitor (LCMII) | Family | Interproscan |
| PF01826 all species → | TIL | Trypsin Inhibitor like cysteine rich domain | Domain | Interproscan |
| PF00094 all species → | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013111 all species → | Domain | EGF-like domain, extracellular | Interproscan |
| IPR002557 all species → | Domain | Chitin binding domain | Interproscan |
| IPR036084 all species → | Homologous_superfamily | Serine protease inhibitor-like superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR014853 all species → | Domain | VWF/SSPO/Zonadhesin-like, cysteine-rich domain | Interproscan |
| IPR050780 all species → | Family | Mucin/von Willebrand/Thrombospondin superfamily | Interproscan |
| IPR001007 all species → | Domain | VWFC domain | Interproscan |
| IPR008037 all species → | Domain | Pacifastin domain | Interproscan |
| IPR036508 all species → | Homologous_superfamily | Chitin binding domain superfamily | Interproscan |
| IPR002919 all species → | Domain | Trypsin Inhibitor-like, cysteine rich domain | Interproscan |
| IPR011489 all species → | Domain | EMI domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11339 all species → | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0008061 all species → | Molecular Function | chitin binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0030414 all species → | Molecular Function | peptidase inhibitor activity | Interproscan |
KAM7447623.1.Genes whose expression across the transcriptome samples of Porites harrisoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites harrisoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |