Gene detail

Detailed information of KAM7448466.1 in Porites harrisoni

Genomic Location: Scaffold0027:1946996...1953687
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g3705.t1

TTTGACAGAACGCCATGTGGAAATTTTGATTAGAACTTGGATGAAAATAAGAGAGATTATATTAGATGAGGTGATTACCAGAAAGAATTAAGCTTATCTCTGCTACTTTGTATCAACATGGAGGAAATCGTGGCCAGCGTGGCGGATTTAAAGTTCGAGATAGAGCTTCAGCTTTATAATCAAGTTGGAGTGCAACCTCTTCCATTCCAAGGAATGGACAAATCTGGTGCAGCTGTATGTGAATATTTTATGAGGAATGTGTGTCATCGTGGCGCACTGTGTCCATTTAGACACACCAAGGGTGAAAAGACAGTTGTATGTAAGCACTGGCTGAGAGGATTATGTAAGAAAGGTGACCAGTGTGAATTCCTTCATGAGTATGACATGACAAAGATGCCTGAGTGTTACTTTTATTCCAAGTTTGGAGAATGCAGCAACAAGGAATGCCAATATCTCCATATCGACCCAGAATCAAAAATAAAAGACTGCCCTTGGTACGACAGAGGATTCTGCAAACATGGTCCAAGTTGTCGGCACCGCCACGTCAGACGCGTGATTTGTCTTAACTATTTATGTGGGTTTTGTCCAGAAGGACCCAAATGTAAACACATGCATCCTAGGTTTGAGCTCCCTGTGAAAGATGAATCAGCCGACAAGAAAGCAAACATTGTTTGTCACTACTGTAATCAGCCTGGTCACAAAGCATCAAGCTGTCCAGCTAATCCTCATAGAGAAAACTTTAAGATGAATCAGTCCAATGTAAGCGTGATTCCTGTCTCAACAAACATGCATGTGCATGTGGAACATGATCAGCCCATGATGAGGAGACCACTGGAGTCAGTAACCTGTTACAAGtgTGGTGACAAAGGACATTATGCAAACAAATGTCCCAAGTCAAGATCAGAGTTGATTGGATTGTGAAGAACAGAAAATTTATTTCATAATTGTGTCCTTGTTAGGGTACCACCTAGCTAGGGTTTGCACATTGAGATCACTTTTAACATACTGTAGGGTGAAAAACTGGCTTTTGTAGCATTATGTAAGATATATTGTGTAGTATTCTATAAAATAACAGTTCAAATAAACAGTCATTGcccagaaatttctgaaactcGAAAAGaactaaaaatttctggatacaTCCGTTCCTTTCGTCTAAGCTATTCGGCCCCTGCACTCAGTTTCTATTATATCCATTGACTACCTACGATTATCGAAagttttttttcaccttttgtgACTACTATATTGCAATTACTGCTTTAAAAAGATCTCCTGAAAATGTCTGTTTGAAGAGAAAACGTGCCCCAGAATTTTCTTATGAAAGAAAGGCTACCCCATATCCTCGAACTTCATTGAAGCTGACAGTTTTGGAACAGTTTCGGATGAGAAAAAAAAGCCCCCTAAACCTTCCCCTGCTTTCCAGATGACTCAAGTTCTTCCaagacatccgaacagataaacaATTTTAAGAGAAGCTTCAAATTTatcaaacaggcttctaaatcATGGACAAAACTGTTTGAGACGTTTCTGACGTATTTTGAATATTTCGGTCGAAGGTGCCCCTGATATCTCGAGCGTGGTTAAAAGGTAACGGGTCGTTTCGCCTGATGGCAGTTCGCCGGACtaagtcgattcgcccgatGTGTCTTTGTCGTTTTTTAGCCTGAGGAAAAGGAATAAGCATGGAAAGACAGTGACTGCGTATGTGGAATCCAAGGTTAACTGAAATAACATCTCGGAGAAGTAGGTTCACTTTGTTGTAGAGTGTTGTATGTTatcgggcgaatcgacttaAGTCCTAGCGAACACCTTCGGGCGAATGGACTTTTGGGCGAAACGACTGCAATTCCATTAAAATCAGTAGAAGTAGTGGTCATCATTTTGTGTAAACTTTTATAATATTGTTAACCAGCATCTTGCTGATTGACAATGTTTTGTAACACCACTTGAAAAGTCGAGTGTACAAGGGAAAAACATATATGTGTTTGGTTGTTAGCATCCTCAAAGGAGCTATATCAGgctatttaCAATCTAGCTTGTGCGCAGTCGCCCCCTCTCAAACAAGGTGGGATGACTCTGCACGGGCTATTTACGTTATATTTGAAATCTGCATCAATGGTCCAGTGTTGTTTTAAGACTTATTACAGATAGTTATGTTTCACTGTACACCTACAGCAAGCTTCGTACAAACGCTACCTGGTTGTATAGGGGGACCCATATACTGTACATGTGTCATTTGTAAAAGAATAGTACATTTTACGTGCCAATAAATGCTGAAAAACgtcc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR045348 all species →	Family	CPSF complex subunit CPSF4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23102 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0098789 all species →	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14404	CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.