Gene detail

Detailed information of KAM7448902.1 in Porites harrisoni

Genomic Location: Scaffold0023:1060453...1067300
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_003170

ATGGCGTCTGGTCATGGAGGGGCCGTTATGAGAAATCTCTGTTATAAAGCGCCAAGACATCCCAGAACAGAGCTACCTGCCACGACGAATGAAAGAACAAGAACTAGTTTAGAAGCTGAACCACCAGCAAACTATGGTTTGGAAGTGAATGGTGATAACAGGCCTTCATCTTCGCGTAGTCACAAAAGACACCACAAAGGTCATAAGCCGAAACTGTCAGTTAGGGAGTCGTTGTCGGAGTCTCTACGGGAGCTAGACGATGTTGACGAAGAACACTTTTACCAGCATTTGTTGGCTTTGAAAAATGAACACAAGAAAACTCTAAAAGCGGTTGAAAAACTTTATTATACCGAAAAAGACAGACACCTTGCTGGATTTGAATTGGATTCAAGGACTAAAATAGGTCTCGGCGACTTTGACGAAAGAAGAATCCCACAGCATTTCCCTTTACATGATTATAATCCCTTTGAAGAGAGGGATAAAGATAAGAGTGAGGGAAACATCGAAATCCCAGTCATGCCAAAAGATCTAGTCAAGGACATGTCAGTAAAAGATCAAAGAAAAATAGAGGACAAGGAAAATGAAGGTGACTCTTCTCTAGAGGAGCTGTCAACTCCGCGGAGAAGATCCTACAGTGATCCTGAAGCCTGGGACGATGAAACCATAAATTCAACGAGTAAACTATCAGAAGATGGGACAGGTTTATACCAGGAAATGTATCCGCGGAGGTCGTCTGCATTGGATGTTGTTGAAGACATGTGGGAAGGATTCTCCGTTTATGATTATCCGCCAGAATCGAGCCCTCCGCGCGAAAGAATACAAAAGAAAAAAGAATGGACTCCGCAGATAACAATTCCTAAGCCATTTGGTATGACGGTGAGAGAAGCTAAGAAGAAAGCAAAAATCACAAGATCGCAGGCGATTCTTCAGGAGGATTTGAAAAAGAAACAAGAAAAAGAAGAAGCAGAGCTGCATAAAAAATTCCGCGCCCAGCCTGTTCCTGCTACGACTTTTTTGCCTCTTTACGATGAAATAACTCGTCAAAATGAGTTGAGGAGATACCAAGTTAGGGAGCTCAGCAAAGCGATTCTAAAATCCACTGAAAAACCGTTTAAGTTCGTGAAACGCGAAGAAGAAAAGAAACAACTGCGGCGAACAAAATCCCTCAGTAATATAGCTGATCTAGAGAACAAAATGGAAGAAAAGAAGAAATTTAAAGCGAATCCTTTTCCTGATCACTTGTTCGATTTGACTTTGGCTGACAAGGTGGCTGAGAAGGAAGAATATAGAACGATTAAAATGCGAATGCGCGCGCAAGAAATGCTTGCCGTGTCCCGCTTGCCTCCTAATATGGAAGCACGGGGTGAAGAGTACACTTTGGGTCATTTTCGCAGCAAGTTGAATAAAGAGGGCAACAAGAACGCCTTCATGACAAAAGAACACAAGTTTAGACCCCAGATAAATCCCGATATACCGGATTTTGACGATCTGCACAGACAGTTTGAAAAGGAGATGAGGGACAAGAAAAGAGAACGGGAACCTACTGTGTCCGAACCATTCAACCTAAGAACGGCGCATGTGTCCACTGCTCGGAAATCCAGGTGCTCTCGGTCTCAGGAGATACCCATCAGTGGTCGATCGTCTAGAGATCGATCGATCAGCCGGGAACGACCTTCGAGTGCTAGGCCTCATACTCCTCACGATACGCTTCCATTTGGCACCACAGAGTCTACGCGTCTGCGCGAAAACACGGTTCGCAAGAGCCTTGAACAGCGGCGAGCCAGTGAACAGGATGAGGTTAAACAAGAACAACTTAGGAGACGGAGACAGAAGATGTTAAAACCAGAAGTGACGAGAAAAGTTATGGCGAATGATAATAGCGGACAACTGAAAAAAGCCGCAAAGGAAAAAGTTCAAAGTTTCAGGGAAAGTGATCGAGCGCGTAGAGAGGAATACCAGCGTGAACTTCAAGAGATGCAGGAGCGTGTAAACAAACGACCGCTACTCTTTGAACAACAATCCCAGGCTACTGCAAGACGTGCTGCAGAGCGCAAGTATGCGGATATTCTGCGAAGCGCAGGCGTGGACGAAGCGCTTGTTCAAAACCTGGTTACCAAGGAAGGCGGGATTGTGGATGCAGAGTCAGAAGATGAGCTTCAAGAGACTGGATCCCAGTTGAATTACAGCGCGTCCAGGCGCTCTTCGGGTGTTGACTACAGGTTTGACAGTCAGGCTTCTAATGCAGAAAAGCTGGAGGACACTGAAAGCGATGTCGAAGAGGAGATTGAAGAAGATGATGATGAGATATAA

Transcript

rna-g3240.t1

ATGGCGTCTGGTCATGGAGGGGCCGTTATGAGAAATCTCTGTTATAAAGCGCCAAGACATCCCAGAACAGAGCTACCTGCCACGACGAATGAAAGAACAAGAACTAGTTTAGAAGCTGAACCACCAGCAAACTATGGTTTGGAAGTGAATGGTGATAACAGGCCTTCATCTTCGCGTAGTCACAAAAGACACCACAAAGGTCATAAGCCGAAACTGTCAGTTAGGGAGTCGTTGTCGGAGTCTCTACGGGAGCTAGACGATGTTGACGAAGAACACTTTTACCAGCATTTGTTGGCTTTGAAAAATGAACACAAGAAAACTCTAAAAGCGGTTGAAAAACTTTATTATACCGAAAAAGACAGACACCTTGCTGGATTTGAATTGGATTCAAGGACTAAAATAGGTCTCGGCGACTTTGACGAAAGAAGAATCCCACAGCATTTCCCTTTACATGATTATAATCCCTTTGAAGAGAGGGATAAAGATAAGAGTGAGGGAAACATCGAAATCCCAGTCATGCCAAAAGATCTAGTCAAGGACATGTCAGTAAAAGatcaaagaaaaatagaggacaAGGAAAATGAAgGTGACTCTTCTCTAGAGGAGCTGTCAACTCCGCGGAGAAGATCCTACAGTGATCCTGAAGCCTGGGACGATGAAACCATAAATTCAACGAGTAAACTATCAGAAGATGGGACAGGTTTATACCAGGAAATGTATCCGCGGAGGTCGTCTGCATTGGATGTTGTTGAAGACATGTGGGAAGGATTCTCCGTTTATGATTATCCGCCAGAATCGAGCCCTCCGCGCGAAagaatacaaaagaaaaaagaatggaCTCCGCAGATAACAATTCCTAAGCCATTTGGTATGACGGTGAGAGAAGCtaagaagaaagcaaaaatcACAAGATCGCAGGCGATTCTTCAGGAggatttgaaaaagaaacaagaaaaagaagaagcagagCTGCATAAAAAATTCCGCGCCCAGCCTGTTCCTGCTACGACTTTTTTGCCTCTTTACGATGAAATAACTCGTCAAAATGAGTTGAGGAGATACCAAGTTAGGGAGCTCAGCAAAGCGATTCTAAAATCCACTGAAAAACCGTTTAAGTTCGTGAAACgcgaagaagaaaagaaacaactgCGGCGAACAAAATCCCTCAGTAATATAGCTGATCTAGAGAACAAAatggaagaaaagaagaaatttaaagCGAATCCTTTTCCTGATCACTTGTTCGATTTGACTTTGGCTGACAAGGTGGCTGAGAAGGAAGAATATAGAACGATTAAAATGCGAATGCGCGCGCAAGAAATGCTTGCCGTGTCCCGCTTGCCTCCTAATATGGAAGCACGGGGTGAAGAGTACACTTTGGGTCATTTTCGCAGCAAGTTGAATAAAGAGGGCAACAAGAACGCCTTCATGACAAAAGAACACAAGTTTAGACCCCAGATAAATCCCGATATACCGGATTTTGACGATCTGCACAGACAGTTTGAAAAGGAGATGAGGGACAAGAAAAGAGAACGGGAACCTACTGTGTCCGAACCATTCAACCTAAGAACGGCGCATGTGTCCACTGCTCGGAAATCCAGGTGCTCTCGGTCTCAGGAGATACCCATCAGTGGTCGATCGTCTAGAGATCGATCGATCAGCCGGGAACGACCTTCGAGTGCTAGGCCTCATACTCCTCACGATACGCTTCCATTTGGCACCACAGAGTCTACGCGTCTGCGCGAAAACACGGTTCGCAAGAGCCTTGAACAGCGGCGAGCCAGTGAACAGGATGAGGTTAAACAAGAACAACTTAGGAGACGGAGACAGAAGATGTTAAAACCAGAAGTGACGAGAAAAGTTATGGCGAATGATAATAGCGGACAACTGAAAAAAGCCGCAAAGGAAAAAGTTCAAAGTTTCAGGGAAAGTGATCGAGCGCGTAGAGAGGAATACCAGCGTGAACTTCAAGAGATGCAGGAGCGTGTAAACAAACGACCGCTACTCTTTGAACAACAATCCCAGGCTACTGCAAGACGTGCTGCAGAGCGCAAGTATGCGGATATTCTGCGAAGCGCAGGCGTGGACGAAGCGCTTGTTCAAAACCTGGTTACCAAGGAAGGCGGGATTGTGGATGCAGAGTCAGAAGATGAGCTTCAAGAGACTGGATCCCAGTTGAATTACAGCGCGTCCAGGCGCTCTTCGGGTGTTGACTACAGGTTTGACAGTCAGGCTTCTAATGCAGAAAAGCTGGAGGACACTGAAAGCGATGTCGAAGAGGAGAttgaagaagatgatgatgagatATAacgaaagagaaagttcaaaagaaagaTGATAGGTGTAGACTGTCTGAAGATAAGCCTACCAACTTCCGAAAACCGTACACCCGAAAACCATAGAAGGAGATTATCGAGTTGCGTATAAGCCGAAACGGTAGCCGGTCTCTTCGTTCCATAGTCACTTTGTTCTAAGTTATACCGTTCTATGGTATTAGAGAACTTTCGATTCTAAGACAAGGACAACTACAAGAGCAACGCGATTTTCTTAACACTAAGTATTGCGAGCGcctgaaccagcgtcattttgacAGGAAGAAAATTAAGCGAGAGCAGTCGCCATTCTACTACGGGTTTAAgttttggtaaagaaaaagtaaaatgaagcttcgcagggtatcttttttaaaaaaatacgcaAAAAACTTTAAGGTAATTCTGGTCCTAAAATGTAAAGGCCGCTATTGTTATATCTTTTGATAAAATAGACTGTTCGTAACACAAATAATTAGGTCCCGCCCACACGTAaggataaataaatgaaataaataaaatcggTTGTGTGTGAATGGGACGTTCTTTTCATTGCAAATAAGTTAGTCCCAAAAGCACGAGTTAAAATAACCGGTAAAATGAATGCCATTGAACAATCTGACTTGGAGCGAGGAAAGGAATCGTTAAGCATATTATAGAGTATAAACTGTTCTGTATGGCACTGTTAAAGATTGACTCGGGAGTTAACTAGTAAGACGACTCGTAATTGTCGTCAATAATTAGGCGGGTTACGAGGTTTATATTGTACTATTAGTCTTAAAACATTTAGTATAATTGTGTTTAGTTCATATTTTAGTTTACCATCTAAGGTCACTaataaaacttaaaaatcaCATAGTTGTCCGAAGTTCTTTTCACCAAAATTTAAAGCTTGTGTGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10595 all species →	FAM161A_B	Protein FAM161A/B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019579 all species →	Family	Protein FAM161A/B	Interproscan
IPR051655 all species →	Family	FAM161	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21501 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16772	FAM161A; protein FAM161A	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.