Gene detail

Detailed information of KAM7449052.1 in Porites harrisoni

Genomic Location: Scaffold0022:1327458...1351045
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_003050

ATGAGCACTTCGAAAGCAGAAGACCGCGATGTCAGTGAGAGAAAGCTTCTTGTAGATGACATCGAGCGAATTCGCCAAGTGCTGCACACTGGTGCTGCTTCGAAGTTGTCTTCCGACGAGGAAGAGGAAGAAGAATCCGACGAAGATGGCCAAGAAGGATGTCGAGAAGTTTTTCTAGGTAGCACCTCCGTAAACTTGCAGCACCAAATAGATGCCCAACTGGCACTAGAGCAGAATTCTCAAGTTGCATTTCCTGGAACTGTATTAGAACCTGTATATGTTGGTCAGCAGTCGTCATTCAATGCAGGGCAAGACAGCAGTGCACAAGGAGTTTCTGATGTTCTCTCTCATCACCAACTAGCCAACAGTAATCTTTTTCCAGCTCACAGAAGTGGTAACCTTTGCTCAGATGATTATACCATTACTGAATTACAGCCAGTGAATTGCCAACCTTCTACTAGTTCCCTTCCAAATGTATCTTATTCAAATGTGTCAAGTTCCTTTACAAATGTTCCTTCCACGAGTGACCCTTGTACAAGTCTTTCTTCTGCAAACCAAGAAGGCTTCAATAATTCAACATGGCCTGCTGTAGATAATCAGTTTTTTGACCCAAGGGATGTTGAGGGACTTGATCAGGAGGAAGACGGTCCATTTTCTGATGGTGAGGAGGAAAACATCGAGGATATGGAAATGCGCAATAAAATTCAACAGTGCTTGATTTTAAATAGAGATTATCAGATTGCAGTGTTAGATGAACTTGAAAGAATAGAGCTGGCTTTGGCAAAGAACAAAGAAAAGCAGCTTGGATTGCATCAAATGAGAGCAAATAAAGATGAAGGGAAGCCAGAAGGTCACACATTAATGAAATTTGCTTATCCTTACTTCAGAGACACTGGTTTAGTGGGTCCACCTGATAATGAAGACACGAAGGTAAAAAGACAGACTTGTCAGGTTGATGGCTACCTGATTCAAGAAAAAATATGGAATGCAAAAGAGAAAGAGCGCTTGGCTGAAGGAGTTAAGATGCAAAATTTGGAAAACAAACTCTCCCCAATACTGCAGAAGATACAAAAATTAGAGCTTAAGAATGTGAAGACAAATAGTGACTTGAAGGAGCTTGAAGACCTTAAGGCAGAGAGCAGAAGAATCAAAAGCATTCCCAAAGACAAACTTGCATATGATTTGGAGGGAATTGACTGGGACAAAATAAGCAGCATCTATGTGCCAAAACGAACTAGTTTTCAGTGTCGCTTACAGTGGTGCAACTTTGATCACCCTGATGTGAACCGGACCCCGTGGACTAAAGATGAAGATAAGAAGCTTCTGCAGTTGGCTAAGGATCCTAACATGACCTGGGTTGATATTGCACAAACCCTCCAGACCAAGCGAACTCCTATACACTGTTATGAACGTTACCAAAGAAGTTTAAACAAGAATCTTCTGAAGAGCAAGTGGACTCCAGAGGATGACAAACTGCTTCTTGATGTGGTGCGTGTTGTTGGAGTAGGGAACTGGGCAAGAGTGGCTAGCTTCTTAGAAGGTCGTCAAGGAGATCAGTGTATGCACCGTTATACTCAGACATTACAGATGGTAAGGAAAGGCAAGTGGACAGAGGAGGAAGATGAGCTTCTTAGAAAAGCAATTGAGAAGTACGGAACAAGTTGGAACAAGCTGTCCGAGATGGTCCCTGGCCGGTCAGGACCACAGTGTAGAGAACGGTGGGTGAATGCCTTGGATCCTAAAATAGACAAAGGAGCGTGGACCAAAATACAGGATCAAAAGTTGCTTGAAAATGTGGAGAAATTTGGTCAAGGAAACTGGTCCAAGATTGCACGAGCCATTGGGAACCGTACTGATAATCAATGTTGGCGCCGATGGATCGTGCTACGCAAAGATGACTTTTTGTACTACCGTCAAAATACATTGCGGAAGAAGAGGGAGCTGGTGGCTAACTTTACTGGACGAAGACAAGAAAGACCATCGTTAAGACCAGAAGATTTGGATATCCCAGATGTGCCAGTTGTGAAGAAGGCAAGAGGACGTATCCCGCTTCCACCAGAAGAGTCTCGAGAGAGGCGAAGATTAACAAGACAGAGGTTTAGAGAGAAGAAACGGGCAGAGAAAATACGAGCTGAAGAGGAAGCCAAAGCAAAGATGGTACAAGAAGCAGAGGAAACAGAGGCGGCAAATGAGGACGAACAAGAGGAGTCAGAAGATATGAGGGATGACAATGAAGAGGTCAAGGAAGTAGCCAAGAAGCCTCGAAACAGGAAAGCGGGAGTAAACAGGGCTAGAATCCAGCAACCCCATTCCCGTGAACTGATGAAAAACAGCCCAACCAAACGTGAACTGATGAAAAACAGCCCAACCAAACGGAGGAATATTGGCGAAATGAAAAGGAAGAATCAAAAAGGTGCTTCTGCCGAGGATAAGACGAGTGCAGTGTCGGGCTTTTTAGGGCCTTTCTCGCTGCTTCTGCAGGCCTTTAGCATCGACATCCCTACGGTTCTTAAAGCCATTCAGAACACTTCAACCAACCCTGCCTCGTCGCACACAAACGTCACTACAACCGCTGAACCCTCGGTATCACTTGAAAACACTGCCGCTGTAGATGAACAGAAGGAGCAAGCGGGTGATGCTACAAGAAAGCAGCAGAGCCAAGCTAGCCATGATCCTGGTAAGTCCCAGTTGCCCTCAAGTAACATCTCTCAGTCAAATATGCACCGAGAAGCTAGTGATGGCATGTTAGAAAATCAGACCAGAGGAGATCAGGGAAGACAAAGAAACCTCCAGAACGCAGAATCAGACTTGCAGTTGCCAAAAGAGAAAAGTAATATGGGCGATCATCAGGGGAATAAACACCCGAATAAAGGGAATACTCCTATCGGCCTGCAAAGCGCGAGAAACGACAATGGAACTACAGCAGCGAAGCCAATGAGTGCTACTCCGTCTGCAACAAGCCAGGCTCCCCGCACGCGGGCACCAGCAATTCCTCCTCTTCCACCCTCCTTTACAACTCTGAGAACGTTCAAAGCCCTTCTTCAACTCCGCCCTGAGTTGCAGAGAATAGCTGCCTTGTTAAATCCCTCCCCTGAGTGCGGCACAGCAAGATCACAAGCTCACCAACCGCCGTTAGCATCGGCCTGTCAAGCAGTCCCGTCTGGTAACCATGGTAACAAAGAGTCCGGTGCACCACGCGTTATACGTGACGTAGCGTCAGAGAAAGACAAGCAAACCATGAGCAAATTAGGTGATAGTGAAATCTCGTCAAGTGAACATGGCGTGGTTACTGTTGCACGTGCAGTTGGCGCAAAGCCCAGCAATAATGTGAAGGAAAGTACAGGTCTCTGTGTTTCTGTTGGAAATATTACAACTGATGACACTTCAAAAACTGGAATCACCCAGCAGGTTCTGAAATAG

Transcript

rna-g3116.t1

ATGAGCACTTCGAAAGCAGAAGACCGCGATGTCAGTGAGAGAAAGCTTCTTGTAGATGACATCGAGCGAATTCGCCAAGTGCTGCACACTGGTGCTGCTTCGAAGTTGTCTTCCGacgaggaagaggaagaagaatcCGACGAAGATGGCCAAGAAGGATGTCGAGAAGTTTTTCTAGGTAGCACCTCCGTAAACTTGCAGCACCAAATAGATGCCCAACTGGCACTAGAGCAGAATTCTCAAGTTGCATTTCCTGGAACTGTATTAGAACCTGTATATGTTGGTCAGCAGTCGTCATTCAATGCAGGGCAAGACAGCAGTGCACAAGGAGTTTCTGATGTTCTCTCTCATCACCAACTAGCCAACAGTAATCTTTTTCCAGCTCACAGAAGTGGTAACCTTTGCTCAGATGATTATACCATTACTGAATTACAGCCAGTGAATTGCCAACCTTCTACTAGTTCCCTTCCAAATGTATCTTATTCAAATGTGTCAAGTTCCTTTACAAATGTTCCTTCCACGAGTGACCCTTGTACAAGTCTTTCTTCTGCAAACCAAGAAGGCTTCAATAATTCAACATGGCCTGCTGTAGATAATCAGTTTTTTGACCCAAGGGATGTTGAGGGACTTGATCAGGAGGAAGACGGTCCATTTTCTGATGGTGAGGAGGAAAACATCGAGGATATGGAAATGCGCAATAAAATTCAACAGTGCTTGATTTTAAATAGAGATTATCAGATTGCAGTGTTAGATGAACTTGAAAGAATAGAGCTGGCTTTGgcaaagaacaaagaaaagcaGCTTGGATTGCATCAAATGAGAGCAAATAAAGATGAAGGGAAGCCAGAAGGTCACACATTAATGAAATTTGCTTATCCTTACTTCAGAGACACTGGTTTAGTGggTCCACCTGATAATGAAGACACGAAGGTAAAAAGACAGACTTGTCAGGTTGATGGCTACCTGATTCAAGAAAAAATATGGAATGCAAAAGAGAAAGAGCGCTTGGCTGAAGGAGTTAAGATGCAAAATTTGGAAAACAAACTCTCCCCAATACTGCAGAAGATACAAAAATTAGAGCTTAAGAATGTGAAGACAAATAGTGACTTGAAGGAGCTTGAAGACCTTAAGGCAGAGAGCAGAAGAATCAAAAGCATTCCCAAAGACAAACTTGCATATGATTTGGAGGGAATTGACTGGGACAAAATAAGCAGCATCTATGTGCCAAAACGAACTAGTTTTCAGTGTCGCTTACAGTGGTGCAACTTTGATCACCCTGATGTGAACCGGACCCCGTGGACTAAAGATGAAGATAAGAAGCTTCTGCAGTTGGCTAAGGATCCTAACATGACCTGGGTTGATATTGCACAAACCCTCCAGACCAAGCGAACTCCTATACACTGTTATGAACGTTACCAAAGAAGTTTAAACAAGAATCTTCTGAAGAGCAAGTGGACTCCAGAGGATGACAAACTGCTTCTTGATGTGGTGCGTGTTGTTGGAGTAGGGAACTGGGCAAGAGTGGCTAGCTTCTTAGAAGGTCGTCAAGGAGATCAGTGTATGCACCGTTATACTCAGACATTACAGATGGTAAGGAAAGGCAAGTGGACAGAGGAGGAAGATGAGCTTCTTAGAAAAGCAATTGAGAAGTACGGAACAAGTTGGAACAAGCTGTCCGAGATGGTCCCTGGCCGGTCAGGACCACAGTGTAGAGAACGGTGGGTGAATGCCTTGGATCCTAAAATAGACAAAGGAGCGTGGACCAAAATACAGGATCAAAAGTTGCTTGAAAATGTGGAGAAATTTGGTCAAGGAAACTGGTCCAAGATTGCACGAGCCATTGGGAACCGTACTGATAATCAATGTTGGCGCCGATGGATCGTGCTACGCAAAGATGACTTTTTGTACTACCGTCAAAATACATTGCGGAAGAAGAGGGAGCTGGTGGCTAACTTTACTGGACGAAGACAAGAAAGACCATCGTTAAGACCAGAAGATTTGGATATCCCAGATGTGCCAGTTGTGAAGAAGGCAAGAGGACGTATCCCGCTTCCACCAGAAGAGTCTCGAGAGAGGCGAAGATTAACAAGACAGAGGTTTAGAGAGAAGAAACGGGCAGAGAAAATACGAGCTGAAGAGGAAGCCAAAGCAAAGATGGTACAAGAAGCAGAGGAAACAGAGGCGGCAAATGAGGACGAACAAGAGGAGTCAGAAGATATGAGGGATGACAATGAAGAGGTCAAGGAAGTAGCCAAGAAGCCTCGAAACAGGAAAGCGGGAGTAAACAGGGCTAGAATCCAGCAACCCCATTCCCGTGAACTGATGAAAAACAGCCCAACCAAACGTGAACTGATGAAAAACAGCCCAACCAAACGGAGGAATATTGGCGAAATGAAAAGGAAGAATCAAAAAGGTGCTTCTGCCGAGGATAAGACGAGTGCAGTGTCGGGCTTTTTAGGGCCTTTCTCGCTGCTTCTGCAGGCCTTTAGCATCGACATCCCTACGGTTCTTAAAGCCATTCAGAACACTTCAACCAACCCTGCCTCGTCGCACACAAACGTCACTACAACCGCTGAACCCTCGGTATCACTTGAAAACACTGCCGCTGTAGATGAACAGAAGGAGCAAGCGGGTGATGCTACAAGAAAGCAGCAGAGCCAAGCTAGCCATGATCCTGGTAAGTCCCAGTTGCCCTCAAGTAACATCTCTCAGTCAAATATGCACCGAGAAGCTAGTGATGGCATGTTAGAAAATCAGACCAGAGGAGATCAGGGAAGACAAAGAAACCTCCAGAACGCAGAATCAGACTTGCAGTTGCCAAAAGAGAAAAGTAATATGGGCGATCATCAGGGGAATAAACACCCGAATAAAGGGAATACTCCTATCGGCCTGCAAAGCGCGAGAAACGACAATGGAACTACAGCAGCGAAGCCAATGAGTGCTACTCCGTCTGCAACAAGCCAGGCTCCCCGCACGCGGGCACCAGCAATTCCTCCTCTTCCACCCTCCTTTACAACTCTGAGAACGTTCAAAGCCCTTCTTCAACTCCGCCCTGAGTTGCAGAGAATAGCTGCCTTGTTAAATCCCTCCCCTGAGTGCGGCACAGCAAGATCACAAGCTCACCAACCGCCGTTAGCATCGGCCTGTCAAGCAGTCCCGTCTGGTAACCATGGTAACAAAGAGTCCGGTGCACCACGCGTTATACGTgacgtagcgtcagagaaagaCAAGCAAACCATGAGCAAATTAGGTGATAGTGAAATCTCGTCAAGTGAACATGGCGTGGTTACTGTTGCACGTGCAGTTGGCGCAAAGCCCAGcaataatgtgaaggaaagtaCAGGTCTCTGTGTTTCTGTTGGAAATATTACAACTGATGACACTTCAAAAACTGGAATCACCCAGCAGGTTCTGAAATAGCGCCTAATCATAGAACACTCATACAGCCGGCAAGTGCTTTACAAACACCATCAAACGAAGCGGGGCATGCCTCGTTCAGGGCCGATAAACAAACAAGCGCCTCGATAAATACAAGTTTACCCCCTCACGGTGGGTCAAGTATTGTCGAAAACAACAACCAAGGCCCAACGGCAGTTACAAGGTCTCGTGCATACCGTAATTCTTACGAGTACAAATTGTTATCCTCACGATTCAGTAGTTTGTTCCTCTGGCCAGCCCTTCTTTCTAAAATTCCAGTCAGGTTTACCTCGCAATTTGGACCAAGCTTTGCTCAACAACATCCCCCGCCTAAATTAAGTATTTATCCCAAACCTCCTGAAGAAACTCGAccgaagaaaagaaagagtGGAAAGACAATTCAAGTTCCTCATCCAAAACGCAGGCATCCTGGTTTAGCAGCAGTGAGGATGGCTTCGACTGCGTCTTTTACGACCCCAGCACAGCAGCTTTGTACATTGGCAAAGGGATCAGCAATTAGAAAGGAGAGCAACCCTGCGGAAACGGCGGGCACGGCAGCTCCGCCAGAGGAGGACGCGGCGTCTACTGACACGAATGAAGTAGTTTTCGCTGCGTCTCAGCTGGTGTCCTTACACAGTGCAACAAAGTCGCGGGAAGCGTCCCGCGCTCAGGGCAAGAGATCTTACAACACACGTTTACCAGTGAAACGAAGAAGGGTTATTGAAAGTTCGTCTTCTTCATCAGATGATGAGACTTTTGTGATCGATGAACGACAGTGGAGAAGTCAAAACGAAGACAATCGACCTGCCAGAGTAACCCGTCAAACAACCCGAAGACTCGCAATGGTACCAGAAGAAAGAGTCGGCACAGTGACAAGTGCCCAGGGAACGTCTTCCTCCCCAATACAGCAGGTTGGCAGTAACTCTAATGTAAATACAGTTATCTCGATACCTTCTGATTCCACCGATGAAGCGCCGCCCAAGTCACCGGTACTGGTCGTCAGAACTAGAGGACAAGACGACGCCCCTGAGCAGGTGTCCCGAGTAACTGCCAATCAGAACGCGACGCCGTCAAAAAGAAGCAGGAACAATAGCGAGGCCTGCAGCCCCTCGACATCGAGCTCCTCAAGGCGGAAAAATCCGCGACCCCTGATCGTCAGTACTGGAGAACAAGAGGACGCTCCTGAGGAGGAGTCCAGAGCAacggccaatcagaacgcgACGCCGTCAAAAAGAAGCAGGAACAATAGCGAGGCCTGCATCCCCTCTCCATCGAGCTCCTCAAAGCGGAAAAATCCCGACCCCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051575 all species →	Family	Myb-like DNA-binding	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAM7449052.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.