Gene detail

Detailed information of KAM7449635.1 in Porites harrisoni

Genomic Location: Scaffold0017:1969026...1989222
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_002553

ATGAAAGGAGGAACTCCAACGCCACAGACCAAACACACAGATGGCTTGACTTCCAAAAAGCCTACTGCAGAACAGATAAGATATGCCCAACTTTTAAACACAGAAGATTCCAAAGCCATGAAAGACAAGATCAAACAGGTTTGTGATGTCACGGGATACGGTTATGATGATGTATGTATCGCCCTGCATGATAACGATTTTGACACAGAAGCGACAATTAATGCCTTGCTGGAAGGACGTCAAGACCAGAGTGAATGGGTCATGAGAACAAATAAAAAGAAGAAACATCAAACGCCAGTCACACAGGCCATTGATTCAATCATTCCCACATCAGAAACGGCTCCATCACAGACAACTACAGCACCATCGTCTAAACCAGGAGGACAACGGCAAAACAGAGGAAAAGGAAAAAATCGACAGTCAGGGGATCGCAATAACAGCTCTGAGAAAGATCAGAAGAATGAAGGAATAGTAAATAACAATGAGAGAAATGCTGGTGAAAGTGGACGAGGAAGAGGATCTCGTGAAGACAGATGGAATGATCGGAAACCTGGTGGCAGAGGTGGACCTCCAAGGCGCAGTGGAAGAGGAGGGGGAAGGCCAGGGCGGTCATTCCAATCCCGTGGCCGTGATAGACCTAACAGATTTGGTGGAGGTAACAGAAATGCTTCGAATTCCACAGCAGTCAATGGACCAGCAGTAAATGGTGAAGAAATATGGGGGGATGAAGACAGTACAAGCAAACAGACCGAGACGGAAGGTACATCAGAAGTTATAGCACCAACAACAGAGGAGTGGGGAGCTGAGGAATGGAGTCCTGTTAAGCAGTCAGTGTCATCCAGCACCAATGATGCATTGTTCAGTAGCAGTACAGGTACAGATTCCTGGCCAGTTAGTTCTGATAGCACTGTTGTGTCATGGGACACACAGACAGTCAATGATTCAACTGCTTCTACAGCACCAACCTCAGACACCAGACAAAAAGCCACTGATAACTCAACGCACTGTCTTGAGAGTGATGACATGGCAATAATACATGCCATACCATGTGGCCATACAAATCAAGCTGGTGGTAAAGATCAGTTCTCTTCTGTCGATTTGCCAATGCCACGTATCCCACTTCCGGGTGAACGACAGTCCTTACACGACCATCAAGACTGGATCAGCAAACTGATGGATAAAGTGGTTCTTTCCTCATCAGTTGGAGTGTCCCCTAAAGATTCTTTGACAACAATTCAAGCTCAGCCACAGAGACAGCCACGTCCTAGCAGGACAAAGAAAACACCAAAGAGTCAGATTCCTGTTCAAGCTGTGGAGATGCCAGGGTCTATGAATGACAATCTTGATGTACAATTTGGAAATGTGGAATTTGGTGGTGATTCTGTCAGCAGTCCACGGAAAAAGGAGGAGTTCCCTCCTGCTCAACAAGAGAACATAAGAGCTGAGGAACCAAGTTCAACCAGTAGCAGTGAGTCCCCAAGCCCACCATTGCCATCACAGCATACTGCGACAAGTCTTCCATCCTCGCCAATTGCCACTCCCATTACCATAGCAACCTCAACATCAGCTGGTTCAAGTCTGACATCATTAGAAGAGAGTTCATCAAGGCATTTCCAGCATCCATCTCCCCGGACTCAACAGCAGTCAATCAACATATCACAAGTAACAAAGCCAATTACACCAGAGCCAATTCCCATGCCAACCCAGATGGACACAAGGGAGAGTTCCGTTCCAAGCAAGTCACCTCTCTCTAGTGACCAACAGAAATCGTCTCCCAATCTTCAGTCATCGACCATTTCCTCACCATCACTGAGTGCTGCAACAAACCATAATCAAGTAGGTTCTTCATCACCAATGAGGTCAACATTGTCTTCATCTTTGCAGAAGGACATCAGCCTAGAGACAAGGCCTTACCAGAAACATGTAACACAGCCATCGGTACCGTCAACAAAAGACAAGCTTAGCTCCAACTCACTGAGCAGCTCCACTGTTGCCTCTGATGTATCTAGAAATGAAGGTCTGTCTTCTGTGGAACCACTTCACCCCCCTCCTGGGGTCACTGTTCCTGCTAATATGAATCAAGTGACAAGCTCGTCATCCTCTGGTTTTACCACAGTAACAATGTCTGGCACAGGCAAACCACTTTCACATACCACAAAACCATCATTACCGCCTGGTGTGTTACCACTAAACCACTTATATGGCATGCAACAAGCAGGACTTATCCATGCTTACCCATTACCATATGGCTATGAAGACCTCCAGAGACTACCAATGTCTCCATACTATGACATGCCACCTTTCCAAGCAGCAGGTAGAGATGGGCTTTCCACAACATTTCATGGAGAGCAAAAGTTTGGTAGAGCAGATGCATCTTCACCAGTGCCAACATCCCTGAACCAGGCAGTGACTGTTCCGCAAGCTCATCTCCAACAACAGGCATTTATTAATGCTACTACAATGCCTCCTTACTATGGTGGACTGGCTTTTTACCCAGGAGCTGGGATGATGGCGGGTGGATTCCCTGCTTATACTACACCTATGTACCAGATGCCAACAAAAACCCATGGAAATGCTTCACAATATCAGTCAGCTTACACATCTGGTCAACATGGATCTCACAACTTTGCTTCTGCATATGATGATTTAGGTCAAACCCATGATTTTGGAAAGTCTGGTTATCACACATCTGTTTCCCCATCACAAAGCAAGTCTAGCACAGGTGCATCTGTAAGTAGCACTTCAGATCTCTCAGGACCTTCATATAAGCCACAAGTTGGAAAGTTCAGTGACAACAAACCATTTATGGGTGGGACACCTCCACCAGGCCCAGCTCTGAATCTATCCATGACAGGACAGCATGGCCCTCTGGGTAGTTACCCTCCCACAGGACACCCATTTATGTCAATGATGACCCATGTGCAGCAGCACCCTCCACCGTCTCACTACCACCACCATATGGCTCATCATATGGAGACTGGACAGCCAGGCACATCACAGAGAGGGTCTCAGGGACAAGGGCCTAAACAGGGACAGAATAAAGGGCATCAGGGTAGTTACCAAGGATCACCGTTTTGGTCCGGGACAAATTAA

Transcript

rna-g2607.t1

AGTCAAGAACTCTTCGTTTGCGAATTATTTTACCGTGTTATGGTATAAGGAGTTATCATCTGGTAAATTTTGTGCATTGTATATATTTCGAGATCTTCAGTTTGGGACAACAAAGCGAAAGCTTTCTTACAGCGATTTAGCGATCGCCACATGTACGACTAAATACCAATGCAAAACCAACGGAGGTTTTCTTGGATGGTTTGGACGATATTTATGCTTTCAAGAAAGTTATCAAGTCATACACGGCTTCGCTCTAGTTAAAGGAAAGAATTTAAAACGCCTGGAAGGTCAAAGTAAAGTGTATCGTAGTTTTGGTGGAGTCTGCTTATTTTAGCAGTCATCCaccatttttgattcgtgaCTCATTCGTAGTTCGTTGTCATCTTCCGTTGTCCACAAGCCTGAAATTTTTGTTTAAGGGATCCTCTTTGTTTGAAGGAGGGTTGTACATACTTTGTATATACTGTACAGATAGGGAACTAGAAGTATGAAAGGAGGAACTCCAACGCCACAGACCAAACACACAGATGGCTTGACTTCCAAAAAGCCTACTGCAGAACAGATAAGATATGCCCAACTTTTAAACACAGAAGATTCCAAAGCCATGAAAGACAAGATCAAACAGGTTTGTGATGTCACGGGATACGGTTATGATGATGTATGTATCGCCCTGCATGATAACGATTTTGACACAGAAGCGACAATTAATGCCTTGCTGGAAGGACGTCAAGACCAGAGTGAATGGGTCATGAGaacaaataaaaagaagaaacatcAAACGCCAGTCACACAGGCCATTGATTCAATCATTCCCACATCAGAAACGGCTCCATCACAGACAACTACAGCACCATCGTCTAAACCAGGAGGACAACGGCAAAACAGAGGAAAAGGAAAAAATCGACAGTCAGGGGATCGCAATAACAGCTCTGAGAAAGATCAGAAGAATGAAGGAATAGTAAATAACAATGAGAGAAATGCTGGTGAAAGTGGACGAGGAAGAGGATCTCGTGAAGACAGATGGAATGATCGGAAACCTGGTGGCAGAgGTGGACCTCCAAGGCGCAGTGGAAGAGGAGGGGGAAGGCCAGGGCGGTCATTCCAATCCCGTGGCCGTGATAGACCTAACAGATTTGGTGGAGGTAACAGAAATGCTTCGAATTCCACAGCAGTCAATGGACCAGCAGTAAATGGTGAAGAAATATGGGGGGATGAAGACAGTACAAGCAAACAGACCGAGACGGAAGGTACATCAGAAGTTATAGCACCAACAACAGAGGAGTGGGGAGCTGAGGAATGGAGTCCTGTTAAGCAGTCAGTGTCATCCAGCACCAATGATGCATTGTTCAGTAGCAGTACAGGTACAGATTCCTGGCCAGTTAGTTCTGATAGCACTGTTGTGTCATGGGACACACAGACAGTCAATGATTCAACTGCTTCTACAGCACCAACCTCAGACACCAGACAAAAAGCCACTGATAACTCAACGCACTGTCTTGAGAGTGATGACATGGCAATAATACATGCCATACCATGTGGCCATACAAATCAAGCTGGTGGTAAAGATCAGTTCTCTTCTGTCGATTTGCCAATGCCACGTATCCCACTTCCGGGTGAACGACAGTCCTTACACGACCATCAAGACTGGATCAGCAAACTGATGGATAAAGTGGTTCTTTCCTCATCAGTTGGAGTGTCCCCTAAAGATTCTTTGACAACAATTCAAGCTCAGCCACAGAGACAGCCACGTCCTAGCAGGACAAAGAAAACACCAAAGAGTCAGATTCCTGTTCAAGCTGTGGAGATGCCAGGGTCTATGAATGACAATCTTGATGTACAATTTGGAAATGTGGAATTTGGTGGTGATTCTGTCAGCAGTCCACGGAAAAAGGAGGAGTTCCCTCCTGCTCAACAAGAGAACATAAGAGCTGAGGAACCAAGTTCAACCAGTAGCAGTGAGTCCCCAAGCCCACCATTGCCATCACAGCATACTGCGACAAGTCTTCCATCCTCGCCAATTGCCACTCCCATTACCATAGCAACCTCAACATCAGCTGGTTCAAGTCTGACATCATTAGAAGAGAGTTCATCAAGGCATTTCCAGCATCCATCTCCCCGGACTCAACAGCAGTCAATCAACATATCACAAGTAACAAagCCAATTACACCAGAGCCAATTCCCATGCCAACCCAGATGGACACAAGGGAGAGTTCCGTTCCAAGCAAGTCACCTCTCTCTAGTGACCAACAGAAATCGTCTCCCAATCTTCAGTCATCGACCATTTCCTCACCATCACTGAGTGCTGCAACAAACCATAATCAAGTAGGTTCTTCATCACCAATGAGGTCAACATTGTCTTCATCTTTGCAGAAGGACATCAGCCTAGAGACAAGGCCTTACCAGAAACATGTAACACAGCCATCGGTACCGTCAACAAAAGACAAGCTTAGCTCCAACTCACTGAGCAGCTCCACTGTTGCCTCTGATGTATCTAGAAATGAAGGTCTGTCTTCTGTGGAACCACTTCACCCCCCTCCTGGGGTCACTGTTCCTGCTAATATGAATCAAGTGACAAGCTCGTCATCCTCTGGTTTTACCACAGTAACAATGTCTGGCACAGGCAAACCACTTTCACATACCACAAAACCATCATTACCGCCTGGTGTGTTACCACTAAACCACTTATATGGCATGCAACAAGCAGGACTTATCCATGCTTACcCATTACCATATGGCTATGAAGACCTCCAGAGACTACCAATGTCTCCATACTATGACATGCCACCTTTCCAAGCAGCAGGTAGAGATGGGCTTTCCACAACATTTCATGGAGAGCAAAAGTTTGGTAGAGCAGATGCATCTTCACCAGTGCCAACATCCCTGAACCAGGCAGTGACTGTTCCGCAAGCTCATCTCCAAcaacaggcatttattaatgcTACTACAATGCCTCCTTACTATGGTGGACTGGCTTTTTACCCAGGAGCTGGGATGATGGCGGGTGGATTCCCTGCTTATACTACACCTATGTACCAGATGCCAACAAAAACCCATGGAAATGCTTCACAATATCAGTCAGCTTACACATCTGGTCAACATGGATCTCACAACTTTGCTTCTGCATATGATGATTTAGGTCAaacccatgattttggaaagTCTGGTTATCACACATCTGTTTCCCCATCACAAAGCAAGTCTAGCACAGGTGCATCTGTAAGTAGCACTTCAGATCTCTCAGGACCTTCATATAAGCCACAAGTTGGAAAGTTCAGTGACAACAAACCATTTATGGGTGGGACACCTCCACCAGGCCCAGCTCTGAATCTATCCATGACAGGACAGCATGGCCCTCTGGGTAGTTACCCTCCCACAGGACACCCATTTATGTCAATGATGACCCATGTGCAGCAGCACCCTCCACCGTCTCACTACCACCACCATATGGCTCATCATATGGAGACTGGACAGCCAGGCACATCACAGAGAGGGTCTCAGGGACAAGGGCCTAAACAGGGACAGAATAAAGGGCATCAGGGTAGTTACCAAGGATCACCGTTTTGGTCCGGGACAAATTAAAATGGCAGCAGCTTCAATGTGATGCACTCGGCACCCAGGATAAAGTGCCGTGTAATAATTATTGGCCTAGTGTGGTGCTGGTCTATTCCTCCTTAACTGTGTGAAATGTGTTCCCTAGTGAGCTTCAAGTAATGGTATATCAGAACCTTTTAGGATGTAAATGATGTGTACAGGCCCACTTACAACAAGCATGTAAATCTGTTTTGCAAtaatttaatgtttttcttaGGTAGCCACTGTAAGGATTTTACAGATTGTAATCTTTGAAATAAACCTGAGTAATTTACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12478 all species →	UBAP2-Lig	UBAP2/protein lingerer	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR022166 all species →	Family	UBAP2/protein lingerer	Interproscan
IPR051833 all species →	Family	Transcription-coupled DNA damage response regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16308 all species →	UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26545	UBAP2; ubiquitin-associated protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.