Gene detail

Detailed information of KAM7450523.1 in Porites harrisoni

Genomic Location: Scaffold0011:2135836...2140723
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g1859.t1

GATAGCACACCAGCCGGCCATCTTGGCGTCGTAACAACTTGACGAAATATGGGTCGTAGAAGTCGCTCGCGGTCGCGCTCTCCCGCCGCCCGCAAGGACAAGGAGAAGGGCAAGGACAAACGCACGTCAAGCACCCGTGGCCGAAGTCCCGTAAAGGCAAgtaaagaaaagacaaaaactaaGAATGAAAGCAAAGCGAGTGCAAAGAATGGTACAGagaagggaaatcgaaaacgtACCCGTTTTCTAGCAGATGCTCCACTGTATTTGTTTCATTAGCTCAGGATCAAGTTCTGGCAGCTCAAGCAGTAGCCGCAGTTCCAGTTCAGGTTCGAGCAGTAGTGGCAGTAGAAGCAGCAGTTCGGGTAGCAGCAGTGGCTCCAGTCGTAGCAGTAGTGGCTCAAGTAGCAGTAGTAGTGGTGATGAAAAGAGCAAGACTCCAAAGGctaaaaaagaagtaaaagaaaaagaaactaaagaAGTAAAAGAAGTGACTAAAGAACCCAAAGAAATCAAAGATAAAGCTCCTCCACCTCCCCCCAAAGCCAAGTCACCTAAAGTTTCCCCTCCCCCAAAGTCGCCCAAAAAATCTCCGGCCCCCAAATCACCCACTCCGCCACCTCGCACAAGGCCCACGCGGCGATCAGTGTCCAAGTCTGTATCCAAATCTCCAAGTCCCGTtaagcgtggacctcgcgcgCGTTCATCTTCGTCGTCGGGTTCGTCGCGTTCGCCGAGGAGACGCAAGAGAAGCCCAACCCCTAAACCCACGAAGCTTTACATCGCTCATCTGACGCGCAACGTGACTAAAGATCACGTGTTTGAGATATTTAGTGTTTACGGGCACGTCAAATCGGTAGACTTGCCGATGGAccgttttaattttcttccaagAGGGTTTGCTTATGTTGAGTACGATGACGCCGAGGAAGCAGAGGCTGCTCTGAAGCACATGGACGGGGGACAGATAGATGGACAAGAAATCACAGCACAAACCATCCTTCCCATGAGGCCTCGCGACATTAGACCTGCTCGTCGACCCAGTCCTCCTCCGCGACGCCGGCCACCGCCACCAGCGTGGAGAAGGTCACCTCCGGCACGATTCCGCGGCTCTTTCCGAGCAGGCGGAAGACGATCACGCTCACCGTCTCCAAGGAGACGATCGCGTTCAAAGTCACGAAGCAGAAGTCGGTCCCCTCCGAGACGTCGAAGATATAGCCGTTCAAGTTCGAGTTCTTCGCGCTAAATATTAGGCAATCAGAGAACTCCTTTCACCATCTGAAGGTACATTTGCGAAACAGAGGAACAAAATCGATTCGCTGGGTTGTAGTTTGGAACACACTCAAAGGCGTCTTTGTAGACTATTTTTAGAGACGTTAACGTAACCGTTTTATGGATATTTTCATTTACGTGTCACTCATCTGATGCTTCAGCAAacacattttgaaaatttcattcAGAGGAACACCCGCACAATGACACGAAAAGTTCCACATTTGTTAGAAATAAATGTGCGCTTGCCTCTGTTGATATTTTTACAGTGCAGTATTCTTTAAGTTTTATTTCGCTTGAGTCGGCCAAAATGTAGATGCAGTTTTCCCTCTTTCTTGTTACAGGCCTCCCATAAATACAAGGTTTATTCCTCTATTAAGTGATCGAAAGAGTTCATTGTTTCATTTCCCCATCCAGACAGcattacattttttctttacagCCTATCCGTTTAGGTTACTAAAAATGCTTTTGGAACATTCCGCGTTGTCCGCTCAAGGCcgttaaatttaaatttaaccCGGTCTTCTTTTTCtagtgttcaaaagcattttgttggataattttctcttttattttaaaagcttccaataatcaacttgtagacaaaaagaattaaaactgaaaagatTTTTAAGATTTCATATCtgattcaaatctcgcactacccctgggttatcttaacccagctttgaacaactcggcccagagcataactgggccaATATCTCAGAGATAATTTGCCCCGAACTGCTAATATTTGGCAAGTGAGcgtcttggacattgttcttttagaatatcttgacaaatcccataatttcacgaatttaatttttattacgtcatcactttagaactctcttgaaaacttgtcagaggtcgtaagcactggggtcgagattgctttaagttcatttttgttttttctaacGTTTAAAATAATGcttgcaggggcggatccacaCCGTTTTCCACCGTTTACGGagatcggtcagatttttcataataaacatattttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034201 all species →	Domain	RNPS1, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15481 all species →	RIBONUCLEIC ACID BINDING PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061574 all species →	Cellular Component	ASAP complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14325	RNPS1; RNA-binding protein with serine-rich domain 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.