Gene detail

Detailed information of KAM7451678.1 in Porites harrisoni

Genomic Location: Scaffold0004:624874...636774
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g719.t1

TTGcgattttaagcgattttttaCTCCAGTTAGTATGGCTTCTGGCGATGAAATTCCCGCAAAAGATCAAAAGGAACAAAGCAAGGAGGAGCAGGAAAAGCCCAAAGATGGTCAATCAACAGGAGGTGCTTTAACTACCACACCGTCTTCAAAAAAACATCCTCTACAAAATAAATGGGCTCTATGGTTCTTCAAAAATGACAAGACAAAATCATGGAAAGATAATCTCCGCCTGGTAACTTCTTTTGATACTGTTGAAGATTTTTGGGGGACATATAACCATATTCAAGCTGCAAGCAAGTTGCAATCTGGATGTGATTATTCATTGTTCAAGGAAGGCATCGAGCCAATGTGGGAAGATGAAAGAAACAGACAAGGGGGACGCTGGCTACTAAATACACAGAAAAATTCCAGACAAGACCTTGACAGATTATGGGTTGAAACGTTGATGCTTCTTATTGGTGAGCAATTTGGAGATTACTCTGATAGTGTATGTGGAGCTGTAGTTCAAATCCGTACAAAGGGAGACAAACTGGCAATATGGACAAGTAACGCGTCAGATCAAGATACCAACCTCAGTATAGGGCGTAAATTTAAAGAACGTCTCGGCCTTCCACGCAAGCTTGTTATAGGTTATCAGGCACATGAGGACACCATGAGCAAAACAGGTTCTACTACTAAATCAGTGTTCTCATTATGATCTTAACATATTTTCTTATAGACAATATCAGAGTCAACTGGTATTTTAAGAAAACCTTAGGATTTATTATATTTAATGAAGTTGAGTGGCTTGAAAACCACTGTCTGGCTTGTCAAAGGTCAGTTGCTCATCCTGACTGTGGtgtgaaaagaaaacactgcGTGCTTATACAGTTCATTgtattttcaaacaatatttTGACATTGTTATTTGCGCAACAACAACTcttctttgtaaaattatatttaGTCTAGTACAGTGTGACTTGACACTACAAGTAGTAACAATTCATTATAAATTTTAATGTGCAATCCTTGTAGTGTACTTGTACACCTTTGTAGGTTGTTCCAATCAAAAAATCACTAAGTGAAAATCACTTGTAATGATCTTGATTTcaaatagaaaaacaaatagcGGTGACtttcaaatgattttttatGAGACATTTTAGAATAAGTAATGcagctgttttgttttcattctgTGGTCAGGTTGGTCACTGTTAAATGACATACAGGCTGTATTAGCTGGTGAGAAGAGAACTCTCATCTTGAGAGACTAAAATTATGGTGTATTGACACTTGACAGAAAGTAAAAAGTCTAGGTTTTGTGTCAGAGACAATGGAGCTTTAAACATACAATAATAATTACTGGACTGGGTTATGTTTCCATAACATAAATACATGTTGTTTTGAGTTAGCCATTTCCCAGCCCTCTAATTATATTCAAGCCCATGTGtataattaattataattattttgggTAAATTCTAAATTTTGGTAACTACAGTGTAATTACAATATATTATCATCATTGAGCATGTGTTACtccttttagtaaaatccaactagtggtctattatcaatgctgtcagtgttctgattggctgagctactactaggctatatgttttagcccactagtagcgaaaagcaccagctttgaaaaccaaaacaatggcggctgaatcgcgttttgctagctaaatttgttttgtctcgatattttttaccaccTAGtaggattttactaaaacgatattattcctctcgccctcatggcctctgagttaatagcccattcggccttcagcctcatgggctattgactcagagcacattcgggctcgaggaataatttgTTAAACCATTTTAGTCAGCATACAGGCACCTCAGTTAAAATGATTTGGTTTAAACTAATTTTGCCTTAAATGCATGCTGCCATGAGTTATCATTGGTTTGCTGAGAAGGTAGATCGCTTAACAACTGGATTAAAAAGTATGTGCTGTCATTCTTTACATAAATGTACAAACTAAGTTGTGTTTGTAGAAGCCAGGTTATGAATCCATGAAGCTTGAGAGCAATATTATTGCTTGCTTAAAAAAATCCACTTATGCAAACTCCTTCGTTCATGTGGTATAGAATGGTATATTTGCAAATATATTTGCAATTTATCAGGCCCAAGTTGTTCAAAAAGGTCGataaaaatcaatcaatcaatcgatcGATCAATAATCTATATGCTCGAATTGAAGACAGCAATATAGCAATATAGTATAAGGTACGCGAAAAGTtgtgttcgcgctttctcaattcagcagACCCGACTATCTCGAACAGGCTAACAGCAACAAAATGTGAATATCTTCGAggataaattattttaaagctCAAACCACTGGATGGCGCAACTGGTTTCCCTAAGACGGAATCACTGGATAGTTCAAGATTTTATTCGgcggatagcgttatccacatTTTGAACAACTCGGGCCAGAGAGCTATATGGCTTATAGACCATTCTCACATATTTGGACTGTGTACAAGGGCACGAGCTACTAGAGCCATCAGGTGACAGAATACAGTGGTGTGTATGGATTTGAGTGCTCAAGCCTTGGCTTTGTTTCATCGTGTGTCGACTGCAGTAGAGTGCGTAACTTTTTACGTAACGTCAACTTACTGTGTTACTTTTACCCCAGCGAGTTAAACCCAAAGGGCCTGTGATTGTGTAACAGGTTTTAGACAATGTGTAGTATTTTcatgggcacccaacgatggtttcctTCTAAAgacgttgaaaacacttttcaggctatccagagtactttgagatatctagaaatgcattctaagcggcgctgtaaaatttgtatctgttcggtcttCCTAGTGGAACTAcaatcttttcgaaattacgagggaCTGAGTATTCACATCTTTGAAtgcgaaaattttaggtttcgttTTTTCTACGAagaatagcctaacctggggggtgaaatgtgaaaaattgaACTTCAGAAAGCGGTAGGggatttattagataagcttccaAAATTgcacatgaatggaacggtcattaagccgtcctcaagtaatagaaaactCTAGACAATATTTGCCTATttgaaaacagtcgttgggtgcccctgtattgTGGCTAGAGCGTTGAGGAATTTTCCACCGCGCTCAATAAGAATGGAACCCGAAGAAAGGTTCTTCTTTCGTATTATGTTTATAGGCCGATTTTCCATTATACGAAAATGAAATCAAGTGAAATGACTTTGTAACGAGGAAAACCCATAAGTACGATGAGTCGTGGCCAAGTGGTTTGTACATTGTAGTTTACGTAAGTCTTTGTACTGTGTATGAATATAGTGTATGGTACTGTTACCTCTTCTGACAAAGTTATATTTGCAAGTAATTTAATTTAAACCTTATTGAGAAGCAAGTCATTTGAAGAGGTCAAGTTAATGTTATTTTGAACAATTCTCAATAATAATCTGGATTGATTTTGTTCTGCGCCACCTTATTCACTGCAGTAATTTTCTGCTAAACTTAAGAATACCCCTAACTTTGTAGGAGTAGTGCAAACTAGTGCAACGTCGGAAATCGTTATGGTGTttagtgccggatccagacttTGAGatagcggggggggggggggacgggggagcggtcatccagaccctaagACAAGGGTGGAGCGGTctcccaaaaaaattttttcagcccttcgggcctcagtttggtccaaaagtAAGGGGGGcactcccctggatccaccactggtATAATTATTGTCTCCATATGTTGTCCGCACCTAACAAAGCCGCGCACCGTAATATTACAATGTAAGTTTATAAATGTCCCAACCTCCTCCCCCTTGGTATTTTCTCTTTTGTGTGGAGATCCCGGGGTTTTCCAAGgtAATACTAGAAAGGGATGACATTTCTTTTACAACAGGAGAGGGATGGGGCATTTCTTTTATGTTCGTCGATTGGTAACTATTGCGTTGGTAGCGATGTCCGACGTTTAACTTTTGTAGTTGAGTAAGGTCTCATGAACATAGTATTATTTgcaattaaaatttttaaatgtcA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01652 all species →	IF4E	Eukaryotic initiation factor 4E	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023398 all species →	Homologous_superfamily	Translation Initiation factor eIF- 4e-like	Interproscan
IPR001040 all species →	Family	Translation Initiation factor eIF- 4e	Interproscan
IPR019770 all species →	Conserved_site	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11960 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0016281 all species →	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03259	EIF4E; translation initiation factor 4E	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.