Gene detail

Detailed information of KAM7452133.1 in Porites harrisoni

Genomic Location: Scaffold0002:1013388...1020459
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF16121 all species →	40S_S4_C	40S ribosomal protein S4 C-terminus	Family	Interproscan
PF00900 all species →	Ribosomal_S4e	Ribosomal family S4e	Family	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan
PF08071 all species →	RS4NT	RS4NT (NUC023) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041982 all species →	Domain	Small ribosomal subunit protein eS4, KOW domain	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR000876 all species →	Family	Small ribosomal subunit protein eS4	Interproscan
IPR038237 all species →	Homologous_superfamily	Small ribosomal subunit protein eS4, central domain superfamily	Interproscan
IPR032277 all species →	Domain	Small ribosomal subunit protein eS4, C-terminal domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR013845 all species →	Domain	Small ribosomal subunit protein eS4, central region	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR018199 all species →	Conserved_site	Small ribosomal subunit protein eS4, N-terminal, conserved site	Interproscan
IPR013843 all species →	Domain	Small ribosomal subunit protein eS4, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11581 all species →	30S/40S RIBOSOMAL PROTEIN S4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02987	RP-S4e, RPS4; small subunit ribosomal protein S4e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.