Gene detail

Detailed information of KAM7452386.1 in Porites harrisoni

Genomic Location: Scaffold0001:1385309...1396063
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g70.t1

AGGTTTTCCATTGATCGATTTCACAAAGAACCGCAAGCCCAAAAGCCCATGTGCAAAGGAGTACTTTCTTGATATATACACTTACTTTACCTTCATTTCTTTCCATTTGTTCGGAACGATTTTAGCGCCAGTTCTTGAAAAGGAACTGAGTCGCCTTTATCTCTGAAAGTGGAAATTGTTCGGTTGAGGCCCAGTGAAGACTGAACACAGAAGTGCAAACATTCTGGTGTGGTATGAAATGGCCAGAGAGTTAATACCCAGCTTGCCATCCTTCCCCCCTTTGGAACATCATTCTTCTCAAAGTTGCAGTACATTTGTCAAGaGAAATAAATCAAGTTGTACCCCCCAAGTGATTGACCTCACAAGTGAAAACTCATCAACTACTATGTCCCATCAACCACTAAGGCACATGCCTCCATATCCACCCCACCCTAGTCACTCGTCAGCATTTCACAGAGTAAACCATCTACCTGGCCACATGCCTGAAACTCATGGaaacTCGTCCAATCATACTTGTCCTTTTCTTCAACAACAAAGGCATCAACAGCATCACCACTCATCCCACAATAGACTTTTCCATCCATCAACAAACGGTAATTTTTGTCCGCTAAGTATGGCGTCGACGGTCCCTCTTCAGCACCATCCACCCCACCCGGGACCTCCAGTTATTATCGACGTTGATCAAATACCAGATCATGTAAGGGCAGTTCCAGTAACAAGTCTTCCAAACTCATTGCTGGTCGCCAGTGTGCCTGTAGCAGCTCCAACTTATATTCAACCGCATCAGCCTCCAATGGATGTCGACCCCAGAGGAAATAATGGAGTCAGCACACACCatcaccaccactaccaccaccaccaccaccaccatcatcatcattttgtgCAGCCACCATATCAAGTTCCACAAACACAGGCTTACCACCCTTACCCCACACCTGGTGGAATGCATCACAGACACCACAGAAGATGGCATCAAAACGTCTCATCGCATTCGAGTTGGTCATCACGGCGTACACATGCAGCACCTCCTCCCCCACCTTCCATGCACCCATATCCTGATCTACTTTATCATCTTATATCTGTGATGTCAATGCAGCCCGTACCAACACATCCTCCAACCCCTGCATGGGAAGAAGAACTGCACCCTCGTGAAAATTATGAGACTCTTCTTAATTTTGCTGAGCAGATGGGCGAAGCAAAGCCAAAAGGGCTCTCTCGTGTTGAAATCGATCAGCTCCCAACATATCGCGTTACAGCAGCATCAAAAAGTGAAGATGACGACAAAAGATGTGTGGTGTGTTTAGTGGATTTTGAAGAGAAACAACTTGTAAGGGTCTTACCATGCCTACACGAGTATCACACAAGATGTATTGACAAATGGCTTAAGTCAAACAGAACATGCCCCATATGCCGAGCAGAAGTAAATGTCAATGCAGAGTGAAGTACAAGAGAGGCAGAATTGAAACCTGAAGCAACTTCATCGCTAACTGAAGGAAACCACAGGGATGAAAAGAAGGATACAGAGCCAAAGCATTCAATGCTTTTCAATTGAATCACTGGGACATACTTGTTCATATAACCTTACATTTTTAAGGCAGAAAATTGCGGCCTGCCTTTAAACAATTTGATAAGAGCTGGCAAGGCTGTAAGAAGCAAAGACGTTTGGAGGAAATATTTGGTGCTAAATAGGGTGTTGATCTTCTTGGGCCCGCCTTTTGTTTAAGACAACAGCGTATCAAGAAATTTGAAGTTCTCAAGTCACAGTTACTATACAGGCTTGAAGAAAAAGACCAGTTATTGGGCAAAACTGTCACGTTCTGTTCAAAATTATTGTGGGATGGACAATGGCTAATCTGTTGCTATCTTAGGGTAAAGTTACTTGTAATGATCAGTAACCAAATCATGCTAACTGTTTTTGAAGAGTTAACTGTTTCAGCCATTTAAACATGTATATACAGGTGTATATCTGCCAATTCCAAAAGTCAGTCAGTGGCAGGAGATTTATATGCCAGGATTAGACCTAATCATATATCTCTAGTTCTCAAGAAAATGATTGTGAAAAAATACCCTAACAAAATTGATGATTTGGACAGAGAGTTGGGGCGAGTCAGAAAatgattccaagggagaggCTGACAGGTCACAATacggaaggggaggggaggaaaaaatattttgcctGTTTTTCCCCTTGCCCACCCCTCCTCCCTAGTTTTCAAGTTGTTTTCATGATGGCGGCTGCAATTAATGTACCTCTTGGTCGCGCTTTCGTTAACAGGCTAGGGGAAATACAATCATTTAGATGGACCTTTCTTCTGTTAAATTGGTTTTGAGTTTTTTCCACTTAACTCTTCTTGGAAAATGTGTCAGTTAATGTTACAATAGCTTAACCAGGAACAAAAATTTGGTACACAATGGTAAGCTGGCTTGAGATCAAAGTTTCAAATCTTCAGGCTTTCTTAAAGTTACAATTGGCaggtatatacatgtatataatcCTCGGTACATGTCCAAAAGTACTACCAGTACTTAAGAATTACTTTTAATCAGGACATTAATTTTTGGTGACCATTCCCTTTGTGCTCATGATGCATTTGTTTGATTTAGCTTGATAGATATGATAGGAAGAAAATAGATACTGCATGGCAACAAATGCTTAGGGTGTAAGGGTTAAGCTGATGATACACGAGGAAGTACATGTATGGTAGGTCTTACGGTCACTACCCACAGCTTTTCAGTGTGTTTATACAAGTGACTGTATAAAAGAACAACTTGCAAAGGATTTCTCTGTTGACAAATGAATATGTGATACATGCCAAACTACCATATTTTGTTCCCCCTAAAGCAAAAAGAAGCTTAACTGCCCTTTTCCAAGCCTTGACAAAAGTTTCTATTTTGAAATTACTGAAAATTATATGAAAGTGTTTCTGCATGATGATGGTCTGACTGTAACCTGCCTCACTTATAGGAATGTAACCACAAACCAACCTAAAATGAGCTTAAATCACCAGAGTATAAATAGACACTTATTAGAGACATGTTAATTAGCCATTATTTGGGTTTGCTGACGGTCTATTAAGCATTATAATGTGTCATCAATTCACAACTTGCCTGGGAAAATATTCATGCTTGCATTGTTTTAGCCTGTTTGCTGGTACTAAAACGTTATTGTTGTGAATTTAAAAGTTTGCATAAAAATTTTATCGCATGTATGGGTTATTAGCTTTTCAATGTGCTTCAATTTTGGGTGTTAGGACAAATTATACAGTATACTGTAGTTGATACTGGATGTTTACCTATTCAAGTTACATCACATTTTTACTGAGAAAAAGAAACCTCTGATAAATACAGAACTTTACCCTACTCCATGGCAAATAATTAGTTATTCATCAGCCTTATTACTTAGTGTTCCTATAATTCTCTGCAAAAAACCTTTTATGTCACAGCTGTTTGTAAATAGACTAGCTACTATGGGTAGAAGATGAGCTTGATATGAAAAATGCAGAACTGGGAAAGGAGTACTACATGATacttataatttttataaagCAATGTTGCATATATAGATATATAGGCTACGGTTTCATTCAAGTGTACAAATGAAGTCTAAAATGTGCAGTGAGCTTTAATCTGTTTGTCAAGCATTCTCATTTCCCAGCGGCATCAATCCCTTTGGTCAGTACAAATGATTGGGTCAGGTCCCAATCCTTGGCtgacttaaccctttaagtcccgatagtgaccaacatcaattttctcctaacaatatccatatgttgccaagagaaatgattatgagagttaataaaatgatcaccaaagaaaaaatgctttgatctgttatcaaactctgtcaattatttttttaaggaaatgtatgaaggtcagtatggagaatttatatgtggatatcagggcttaaagggttaaggatcAAGGCCTCTGGTGATCAGAATGGTTGTCAAGCGACAGAACATTGTGATTGTTTCCATCAGTTGGACTTCCATACCTGCACATCCTTAGTCCTCTGTACATGAAATTGcaatgaaaataaatttcaaaataacaaCCAAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46171 all species →	GH10160P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19041	RNF38_44; E3 ubiquitin-protein ligase RNF38/44	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.