Gene detail

Detailed information of KAM7452425.1 in Porites harrisoni

Genomic Location: Scaffold0001:1851673...1862575
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g106.t2

ATGGTTTCGTATGTAGTATCGCGAGTTATCATGCTCGTTTTCGGAACCCTGTATCCCGCTTATTCATCGTACAAGGCTATGAAGACGAAGAATGTCCGAGAATACGTTAGATGGATGATGTACTGGATAGTTTTTGCCCTTTTTATTACTGTAGAACTCTTTGCTGACCTTCTACTAGCATTTTGGTTTCCTTTTTATTATGAACTCAAGATAATATTCATGCTTTGGCTTTTGTTGCCAGCAACAAAGGGATCAAGCATTTTGTACCGCAAATTTGTCCATCCATGGCTGTCAAAGAATGAGAAGGATATTGACAGCTATATTGAGCAGCTAAAAGAAAGTGGGTATGACACCGTCCTAAGGGTCAGCAAAAATAGCCTATCCATAGCTGCAGATACCATGATAAAGACTGCTGCCACGGGCCAGACTGTTCTGGCGGAGAAATTGCGCCACTATGGTACAGATGCCACTGACAATAAAAGAGGTGCAAGACTTCACAAAGCCAAATCATGGTATGGTGGAATGAATACTACAGACAATGACTACATGCCAATTGACGAATCTGAAGAATACAGCCTGAtagaagaaagagaagaagaggaagaagaagagtcTGTAAACCCTGATGTGGAGAGTGCAAAGCTGAATGAAGAATTAAGAGAACATCCAAAAGAGACTAAAACTCAAACAACCAAGCGGTCACGAGGATCAAGTAACTACCAGTCACTCACCTTGCCACGCTCATATGGGAGAACCTCACACCGTGCAAAAGTTCATGGGGCAGGATATGATCCCTTTGagTCATCAGCACATTCTTACAACCCTGGAGATGTTAGGACTTATGAGACAAGAGCACAAAGGAGGACCCAGCGGAAGATTGTGTAGGCCTCATGTTAGCTTCTCACTTGCTTTCTTGTTTACTTTTTACTACTTCAGCGTGCTGCCAGTACAAGGGTTCAACCCAGACGAAGCCACAGGAACAAACAAGGCCGTTCACTTCCTGTTATTCCACATGGTTCAAATGAGGCAAATTGTTGATGTCCACtggaaaaaattctgtattagTTTGAGGCCATCAGTGGCATTTTCTTTTAGATTTGTGGGGTTATTTTATCAAGAACATCCTGTGAAGTGAATTCAGGATTCATTACTTCTTATTTTAACTGAGCTGAGATCAGAGTCTATATTATTGTTTAACTTAGCAAATATAATTCCAGCAGGAAAGGTGAAACAGATTTCACTTTCCTCCTAATCTCAGGTTTGCTAGCTTTGTATACTTATAAGTGGTCAAAGGAGTATTGCTATAAAACTCTGGTTTTCAGCTATTTGCCCAAACTGCAAAACTGTCCAAACaccattttttttgctttggtaCTGCTTTGGTGCTAATCTAAAATGACCACCGTTAAGAGCTAGTGTTGGCTACTATGCctaaaaatgatgaaaactaaTCAATTGTGAGGTTCCAATAGAGGGGGAGGTATGTCAGGGGTACccaatggcaatttttggaaaatatctggtTGGAAGATGATTGGAGATCTAGAATTTtaggaacatttgttgtaaaatttcttgcttgccttcttctcctaggattttcaaacatctaaaaaatggtataattgcccattttaaagggatttttaccctaaaaaggtcacctagtaTTCTCGGGAGCCTtctttctggctgaaattttcgaaaaggtaagtttcgatcattataattttcggatcactagactttcagctaggaaatctgaacagataaaaaatttttaggggacaaaaatatacctatatctaccgtttaaatgctaaaatacgttcaacaatgctatatttaagtggttttgaactatattctcattgggtgcccctggtatgtccctagtctgaatttcaaaacccgTTATTTTGTATGTTGAAGAGGAAGCCATGTCCTTTTCAGCATTTTACTTTTGTATTTGTACTTGCTTTTGTTGCTGTCCCAATTTCAACCCATCTTGATGttatagagtaccgaagtgtgacgtcataaaaaatgaaatttgtgaaattatgggatttgttaagctattctgaaagaacaacgtccaagacgcctactcgccaaaaattagcaatttggggcaaattgtctctgagatattagcccagttatgctccgatgactccatacaaatccttctaaatcttacctggttcctaatcttatgaaccaagccaaatttagaaggatttgtatggaatcgtcgcagcataactgggctaatatctcagaaatttgccccgaattgctaatttttggcgagtaggcgtcttggacgttgttctttcagaatagcttaacaaatcccataatttcacaaatttcatttttatgacgtcatcacttcggtactctatttgTTACCATCTAATCTGACTTACCAGTACGTTGCTCTTCCAAGGTCATGTCACTTGTCAGAATTTTACCCTATAACATGGCCTCATTTGCTATTTAACTGCCTTTTTCTCCTACCTGGTAAATatatttctcaaactcattaataattcataaataaaattcaaaggaaattaatgttgaatgagtgtttggatatcggatgaaaaactgctcatttttgcatccttaatttctccttcaaaaatgattttgtttgagaagaaatatcaaacattcgacacagtgtttcatcaccagatgaaacacctcgaagttcgtcaaaaatactccgctacgcgtcgtattttcaactctcttctcggtgtttcatctggtgatgaaacactgcgtctcatgtttgatatattacgtgAAATTTAATAGTCATTCAAGAATCTCTTGGatgcaaaaataaatttgagTTTCACCTAGAAAATGAGATTCTGGAACGAAAATCTTCTGTTAAACAAGCAACCCCTTTGTTTCTATAGAGAGGGTGTCCCTGGGGTCAATGGGATTTCTAGTGGTTTAGATGAATTGAATGGGGATGGATTAAATACAATGTACCTTGAGGCGGGGCTGTCACTAGGATTTCTCCTGGTTATTATGATCACGATCCCCAGCTACTTTgagaggaaacaaaaggaaaattaaatagAACATAAAGAACTTCCTACAGGTAGCttttcaataaattattttGCCGTCTTGTTATTGCATAATTATACCcagaaacttgaaatcttagtgacatccctgtTCAGGTTGTCTCCATTTGTGTAACAGAATTTGCCCAATGGCAAGCGGTTGTTAGCACAAAGAACGTTATGGCTTTTAATAGTATAAAACTGTGTAGGAAGAATAAAATCGATAAAATTGCTGTAGATTTTCTTCAAGAAGCAGTTACATTTATTGTATCAGCTACATGCACGCCAAACTTAGTAGATGgtaaagttttgaatttttaccCGGGAATGTAAAATATccatttacaaaattaatagCGGCAACATTTTGTGCCAAACTCTACGGTAGTATTGAAAGGTgtattttattatctttttttgaCCAGTTTATATTTTGCCGAACTGTACATTATGCACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03134 all species →	TB2_DP1_HVA22	TB2/DP1, HVA22 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004345 all species →	Family	TB2/DP1/HVA22-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12300 all species →	HVA22-LIKE PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17338	REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4	-	Structural proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.