Gene detail

Detailed information of KAM7452620.1 in Porites harrisoni

Genomic Location: Scaffold0001:4870534...4893080
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01370 all species →	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028614 all species →	Family	GDP-L-fucose synthase/GDP-L-colitose synthase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001509 all species →	Domain	NAD-dependent epimerase/dehydratase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43238 all species →	GDP-L-FUCOSE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009226 all species →	Biological Process	nucleotide-sugar biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050577 all species →	Molecular Function	GDP-L-fucose synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02377	TSTA3, fcl; GDP-L-fucose synthase	EC:1.1.1.271	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.