Gene detail

Detailed information of KII62204.1 in Thelohanellus kitauei

Genomic Location: scaffold05042:5519...8651
NR annotation: no NCBI-NR hit recorded
Species Thelohanellus kitauei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RF11_14403

ATGGACGTCAGGGTCACATCTCGCGAAATTGTCGCAGCAGTAGAACGCGAAGTTCACAAGGTCCAGGCCTTTTTGAGTGAATTTATTTATGTATTTGGCGTTCCAAAGACACTACACACAGACCAAAAGGCAAATTTTAAAACTAGAACAGCGCCTTACCATCCACAATCGGACGGCCTTGTCGAAAGATTTAACAAAACACTGGTCAATATGATCTGGAAATCCATTTACGATGATTCTCAGTGGGACGAACATATCAAGAAACTAACTTTTTCGTACAATATCCGCGCCCAGGATACGATGTCATCACCTTATTCGCTCATGTTTGGCCGAGACCCAAGGTCAGTGTTAGATGGTAAATTTAACTTAAAACAATGCAAGAGCCTCAGTGTAGCATGCGTATACGTACTGCCAGGAGCGGAAAAACCTACGCCCGAATTTCTTGGAGACTTGGCTGATCTGGAGAGCTGGATTTTCAGATTTAATCTGATCGCTAAGGGTTACAAGTGGGGGGATGAAGAAAGGTCAGATATGTTGCCAACATACTTCGTGGGCAATATTCTTGAATGTTATAGATCTTCAGGGCTCGAATCAATACCCTCATCGAAGAAGAAGTTCGACGAGACTGTCCAGTGGTTGAGAAATCAATCCATCGGGGCAGACTCGCTGTCTTCAAACTACCAGAAGTTTGAATCCCTCCCCCTACTCCCTGGTCAAGACCCAGTAGAGTTCGTGAATACCCTCTCGTCTCTTCTGAAAAATTCAAGACCAAAACTATCAGTCGAAGACCACGATTTCCTTGTGATTCAAAAGTTCCTAAAATCTATTCCCGAGTCGGTCTCATCCATTCTGCGCCTTTTCAACACATTGAGTCCAAAGGATCTAGCTGATAAAGGAAGGATATTGCTCTCCTCAGCCATGCAACCCGTCTCGCATAAGGTAATGTCCGTAGTTTCGAACGGAGAACTGGAAGAATGTGCTGGTCAACATCGCATAATGCCTAAATCCTTGGAGGAAAAACTCGACGATATTGCGCGTCGACTTGATGCTTTAGAGGTAAATGGTAAAAAAGTTCAAACAAGTGGGCCAAATGTCGATGAAAGGTGCCAGAAATGCGGAAGAAACGGTCACTTGACTGAAAAATGTAGAGCATACATACGCTGCTATAATTGTGGAGAGGAAGGCCATACACAGAGGTTCTGCAGGCGCACAAGTAGAAACAATAATAGTTTTAATTCATATTCTTCAAAACGCTATTTTTGTGGTTCATTCAGACAAAATAACGACATTCAGGCAACGATCCCGATGATTTTGGAGAATGGGACAGTATTAAATGTTTTGATAGATACAGGAGCATCAGTGTCACTAATCCACTCAAAATTTGTTTCAAGTAAACCATTATCAAGATCGTACTATCGATTGGTATCAGCCTTCCAGACACAGACTACCCCTATAGGGTCTGTGGCGCTTGATATTACTTTGGCGCGAAAATCTTTGTCATGGTCATTTCTGGTGGTGGACGCACTATTATTTGATGCTATTATCGGGAGAGACCTTATTTCAAAATTTAAAGCTGTGGTTAACATATCGTCTGATTCTGTGTTGGAATTCCCAAAATCTATTGCCGTATATAACAATTTTACATTCCACATTAATAAGGACTTGGACAGTCAAACAAATGGTCAAGTGACAGCACTGTTATGTCAAAATAATCAAATATTTGCTAAGAGTAAATTCGATACAGGCGTAGCAAAAGATATCGAGTTTCCAATAAATATTGTGAAAGATGAACCTATAAAAAAGAGGCCTTATCGAATACCCATCAATGTGATAGACGAAGTAAAGACACAAATTGATCAAATGCTCCAAATGTCCATCATCCGTCCTTCCAATAGCCCTTGGTCGGCACCCTCGCTGTTAGTAAAGAAAAAAGATGGCTCCCATAGGATGTGTGTAGATTTTCGATCCCTTAACGCCATCACAATCAAAGACGAATATTCCTTGCCCCTGATCGATTCGATCCTTGATCAATTATCTGGATGTAGATTTTTTTCTACATTAGACATGCAAAACGGATATTGGCAGATTCCAATCAAAGAAGCGGATAAACAAAAAACAGGATTTTGCCCTGGACCAGGCATGGGACACTACGAATTTAATGTTTTACCTTTTGGTTTGGCAAATGCCCCAGCAACATTCCAGAGATTTATCGACAAAGTACTTGAAGGTCTCCCGAATTGTTCGGGTTATCTCGACGATATCATTATATACTCAAAAACACCTCAGGAGCATATTTTACACCTCGGAAAAGTTTTCGAACGACTTAAGGAATTTGGTTTAAAACTCAAGCAATCTAAATGCTTCTTCGCTCAAAGTAAAATAAAATTCCTAGGCTTTATAGTCTCAGGTTCTGGCATATGCCCCGATCCTTCACACATCGAAGCGTTGCTAAATTGGAAGTGCCCGCAAAACGCAGACGAACTTAGGCGATATCTTGGAACATGCAATTTTTATTCAAGATTTTTAAAAAATTTCGCTCATGTGGCTACACCTCTCTATAATTTGTTAAAAAAAAGTGAAATATGGATCTGGGATACGAGTTGTCAAAACAGTTTTAACTCACTAATCGACATGCTCAAAAATATAAAATCAGTATGGCTTCCAGACCCGATTTTACCCTTCAGGCTATCCACTGATGCATCGGATGTTGCAGTAGGAGCAGTCTTATCGCAACTCGTAGATGGGATTGATACCCCTATCTCATTTGCAAGTCAAAAATTATCGCCTGCACAGATAAAATACTCCACATTTGACAAAGAATGTTATGCCATATTGTGGGCCATACGAAAGTTCAGACACTTTCTCTATGGCAAGCATTTTGAGGTATTCACCGATCACAACCCGTTAGTACATCTTCATACAATGAAATACCCAAGAGGGAGGCGTTCTAGATGGTTATTAGAGCTCCAATAA

Transcript

rna-gnl|WGS:JWZT|mrna.evm.model.scaffold05042.4

ATGGACGTCAGGGTCACATCTCGCGAAATTGTCGCAGCAGTAGAACGCGAAGTTCACAAGGTCCAGGCCTTTTTGagtgaatttatttatgtatttggCGTTCCAAAGACACTACACACAGACCAAAAGGCAAATTTTAAAACTAGAACAGCGCCTTACCATCCACAATCGGACGGCCTTGTCGAAAGATTTAACAAAACACTGGTCAATATGATCTGGAAATCCATTTACGATGATTCTCAGTGGGACGAACATATCAAGAAACTAACTTTTTCGTACAATATCCGCGCCCAGGATACGATGTCATCACCTTATTCGCTCATGTTTGGCCGAGACCCAAGGTCAGTGTTAGATGGTAAATTTAACTTAAAACAATGCAAGAGCCTCAGTGTAGCATGCGTATACGTACTGCCAGGAGCGGAAAAACCTACGCCCGAATTTCTTGGAGACTTGGCTGATCTGGAGAGCTggattttcagatttaatctGATCGCTAAGGGTTACAAGTGGGGGGATGAAGAAAGGTCAGATATGTTGCCAACATACTTCGTGGGCAATATTCTTGAATGTTATAGATCTTCAGGGCTCGAATCAATACCCTCATCGAAGAAGAAGTTCGACGAGACTGTCCAGTGGTTGAGAAATCAATCCATCGGGGCAGACTCGCTGTCTTCAAACTACCAGAAGTTTGAATCCCTCCCCCTACTCCCTGGTCAAGACCCAGTAGAGTTCGTGAATACCCTCTCGTCTCTTCTGAAAAATTCAAGACCAAAACTATCAGTCGAAGACCACGATTTCCTTGTGATTCAAAAGTTCCTAAAATCTATTCCCGAGTCGGTCTCATCCATTCTGCGCCTTTTCAACACATTGAGTCCAAAGGATCTAGCTGATAAAGGAAGGATATTGCTCTCCTCAGCCATGCAACCCGTCTCGCATAAGGTAATGTCCGTAGTTTCGAACGGAGAACTGGAAGAATGTGCTGGTCAACATCGCATAATGCCTAAATCCTTGGAGGAAAAACTCGACGATATTGCGCGTCGACTTGATGCTTTAGAGGTAAATGGTAAAAAAGTTCAAACAAGTGGGCCAAATGTCGATGAAAGGTGCCAGAAATGCGGAAGAAACGGTCACTTGACTGAAAAATGTAGAGCATACATACGCTGCTATAATTGTGGAGAGGAAGGCCATACACAGAGGTTCTGCAGGCGCACAAGTAGAAACAATAATagttttaattcatattcttcAAAACGCTATTTTTGTGGTTCATTCAGACAAAATAACGACATTCAGGCAACGATCCCGATGATTTTGGAGAATGGGACagtattaaatgttttgatagaTACAGGAGCATCAGTGTCACTAATCCactcaaaatttgtttcaagTAAACCATTATCAAGATCGTACTATCGATTGGTATCAGCCTTCCAGACACAGACTACCCCTATAGGGTCTGTGGCGCTTGATATTACTTTGGCGCGAAAATCTTTGTCATGGTCATTTCTGGTGGTGGACGCACTATTATTTGATGCTATTATCGGGAGAGAccttatttcaaaatttaaagcTGTGGTTAACATATCGTCTGATTCTGTGTTGGAATTCCCAAAATCTATTGCCGTATATAACAATTTTACATTCCACATTAATAAGGACTTGGACAGTCAAACAAATGGTCAAGTGACAGCACTGTTatgtcaaaataatcaaatatttgctAAGAGTAAATTCGATACAGGCGTAGCAAAAGATATCGAGTTTCcaataaatattgtgaaagATGAACCTATAAAAAAGAGGCCTTATCGAATACCCATCAATGTGATAGACGAAGTAAAGACACAAATTGATCAAATGCTCCAAATGTCCATCATCCGTCCTTCCAATAGCCCTTGGTCGGCACCCTCGCTGTTAGTAAAGAAAAAAGATGGCTCCCATAGGATGTGTGTAGATTTTCGATCCCTTAACGCCATCACAATCAAAGACGAATATTCCTTGCCCCTGATCGATTCGATCCTTGATCAATTATCTGGATGTAGATTTTTTTCTACATTAGACATGCAAAACGGATATTGGCAGATTCCAATCAAAGAAGCGGATAAACAAAAAACAGGATTTTGCCCTGGACCAGGCATGGGACACTAcgaatttaatgttttaccTTTTGGTTTGGCAAATGCCCCAGCAACATTCCAGAGATTTATCGACAAAGTACTTGAAGGTCTCCCGAATTGTTCGGGTTATCTCGACGATATCATTATATACTCAAAAACACCTCAGGAGCATATTTTACACCTCGGAAAAGTTTTCGAACGACTTAAGGAATTTGGTTTAAAACTCAAGCAATCTAAATGCTTCTTCGctcaaagtaaaataaaattcctAGGCTTTATAGTCTCAGGTTCTGGCATATGCCCCGATCCTTCACACATCGAAGCGTTGCTAAATTGGAAGTGCCCGCAAAACGCAGACGAACTTAGGCGATATCTTGGAACatgcaatttttattcaagatttttaaaaaatttcgctCATGTGGCTACACCTCtctataatttgttaaaaaaaagtgaaatatgGATCTGGGATACGAGTTGTCAAAACAGTTTTAACTCACTAATCGACAtgctcaaaaatataaaatcagtaTGGCTTCCAGACCCGATTTTACCCTTCAGGCTATCCACTGATGCATCGGATGTTGCAGTAGGAGCAGTCTTATCGCAACTCGTAGATGGGATTGATACCCCTATCTCATTTGCAAGTCAAAAATTATCGCCTGCACAGATAAAATACTCCACATTTGACAAAGAATGTTATGCCATATTGTGGGCCATACGAAAGTTCAGACACTTTCTCTATGGCAAGCATTTTGAGGTATTCACCGATCACAACCCGTTAGTACATCTTCATACAATGAAATACCCAAGAGGGAGGCGTTCTAGATGGTTATTAGAGCTCCAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF08284 all species →	RVP_2	Retroviral aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KII62204.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.