Gene detail

Detailed information of KXJ05291.1 in Exaiptasia diaphana

Genomic Location: LJWW01002027.1:293...3678
NR annotation: KXJ05291.1, V(D)J recombination activating protein 1, partial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ05291.1

TTCAAAGTAAACATTGCCGACGATCAACAAAATGTCCACCCAACTCAGCTTTGTAACAACTGTTATGCCATATGCCTGAACTTCCAAAAAAACCCTTTGTATAAAACAGTCCAAGAGGTTGTTTCTTGGAGCAAACATGAAAATGAAAACTGTTCAGTGTGCGACAATTACGCTAAAAAACTTCGCGGAGGACGGAAGCGAAAGTTGTCAAAGGGAAGAGGGCGGCCAAAAGACTCTAAATCGTTATACACCAAATCAACTGTTGGCAAACAACAAAAAAGGTCTCTGCCACAGAACATTATTCCTCCCCCAGTAATTGATACAATGCCAGAATTATTCAGATTTCATTCCCCACCAGAAGATCTTCTATGTCCAATTWGCAAAGAAATCTTAAGTAGGCCTGTACAGTCAYAGTGCCAGCATCMTTTTTGCTTTGAGTGTGTGCAAGAATGGATGATACATGCCMGTAACCAAGRAAATTGCCCCTCTTGTTTGCAATCCCTGGATATTGTTGAATTCACTCGAGTGCCCCGTGTAATAATGAATGTTTTAAATTCGTTGTTGGTATCATGTAGATCATGTAAAAACATGATTCAACTAGATCAATTAGCTTATCACGAGCAGCAATGCAAAATTTACGAAACCAATATTGAATCAAAGACACTGGCCGAGGTATTGCAATCCCCTAATGATGCCCRACTAAGCACTGAKGAAGAACGCGCCGTCACCCACTTGGTTAAAAGGAAGCTCTGTGGTTCCACAAAGTCACAAGTCATATTAAAAACTGGGGGAACGCCATTAAAACTCTCTGTTGAGACAACATCCAGGAAGCCGCTTCCCGAGGTCAGCACTAAAACTATCCAGCGCCGTGTGAATGCAGTGCAGATGCTTCGTCAAAATCTTGCAAACTACAACAAAGTTGAAAACAACTTATTGCGTGAGAATGAACTCAAAAGACTTGGCAAAGATGAGCGTGACGATTTACTTAGGAATGCTGGACTCTGTCTGGAGGTGCCACCACTTATAAATGTCCCTATAGATCAGGTATGCTTACCTGGATTGCATGTCAGTATTGGCATATTTGAAAGACTTTATACTCTTTTTGTTGAATCCCTACATACATTAGATGTAACCATAGCCAATGCTCTGGCAAATAAAGACAAAAAGGTTGGTAGTGGAGGGTTTCTTACCTTTATTGAAACACTTAAAGAAGCACAGAAGAGAAGAGTGGAGACAGCTGCAATCAGTCTAGAGGCTAGGCAATGTGAAGAACTGGCCACATACTTTTCGCTGCATACCGACAATAACACCTTAGCTGATGCATTGCAATCAAAGGCCAACCAACTACGGGAAAAAGAAAAACATCTGACAGACAACATTGAAGATTCTAATAATCTTAAACAATCTGATGGACCTTGTGTTCAAAGTTTAAAYGAGACTTTGCACAAAATAGGTGTTGATCGACAAGCGTACCATGGGGGCTCATTCAATGGAAACCATACAYATAAATGTCTTTTGGAAAAAAATGTCACCCTGCTTGCCAACATTCCCATTGAAGTGACAAGAAACMTGTGCCCCGAGCTTACACTGGAAGCTGAAACTGTACACGATCAGTTTAAACAAATATTGCAAAGTTATTCTAAGATTCACAAGCTAATGAACAAAAACGTAAAACTTAGTAAGGAAGATATATCCAACCTTGAGACATATATAACTGTTTTCATGGCACTGTATCGCTCCTTCTTTCCTGAAGCCTCTATTACACCAAAACTGCATTTTCTGGAGGACCATGTCATTAAGTGGGTTAAGACATACAACATAGGATTTGGATTACTAGGCGAGCAAGGAATAGAGGGAATACATGCAGAGTTCAACACACTGAAGAAAACATATTCATGTCTTAGAAAGCCAACAAGTCAACTTCAGTGTGTTATGGACGAACATCATCGAAGATGCCACCCTGAGAATATTATGTTAACACCAATGGTAAAACGCCGAAAAAAGAAATTACAAGAAGAATGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12560	RAG1_imp_bd	RAG1 importin binding	Family	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR035714	Domain	RAG1 importin-binding	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31424	PROTEIN CBG23806	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan