Gene detail

Detailed information of KXJ06110.1 in Exaiptasia diaphana

Genomic Location: LJWW01001155.1:1...12496
NR annotation: KXJ06110.1, putative ATP-dependent RNA helicase DDX58, partial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ06110.1

ATGGCGACTGGCGTCACTTCCCCATCATCATTTTCAGCCAGAGAAAAGACAAATTTCATTAGGTTGTCAAGGCTACTGATTGATGTTGGAAGACGTGTGTTCCAAGATGTCTTTGATTCTATGCATCCACCTTCCACTCTCCATGCAGTCCTCAATTCTATTCCTGTTAAAAACAAGCTGCTTAGGCTTCAATCCTGCAAAGTTCTTCATACACAACAATGGAATCTGCTTTACCCTACCTCAGGCATAGCACAGTCAAAAGACTTTGATATTACTCTGCTTTTCCTCCTGTTAAGGAACTTCTGTGGTCTAAGAATTCCTTCAAGAGGATGGGATAGTGAACCAACACCAACAAATCTAACTATGGAAGATGATCTGGTTAGGATAAAACTTTGTCGTAACATGATTTATGCTCACATTGTAGAGATGGCTTTGACTGATGATGAATTTGAAAGTTACTGGGACAAGATTGAGGCAGCTTTGAACAGACTTGGAAAGTCTAAGTATAAAACACAGATTGAACATCTCAAGTTTACATCAATAGATCACGAGATGAACAACTGTTATCATGCGCTTGTACAGTCTTGGGAGGAGATGAAATGCAATGCCAATCAACAAGAATATACAATGATTATCAGAGGTATCATCAAGACATTAACAGCTGGAGGGACAATCTTGGCTTGGACTGCAGGAAGTGCTTACTTCTTAATGCGTTACAGAGAAGACCCTGAAACAGTGATACGTCTCGTACGAGAAGCAATTGTACCTAGTGGTTTTGCAACCAGTGCAATTGTGTATGCGTTATTGCCAGGCTCTTTCAAAATACTTGTAGAGATTAACTCTGATGCCTTAGATTACATATCAAGAAGCCTCAATGATGGAAGCTTAAGAAAGAATCTGGAAAACGTTATCGTTACCGATAAATTATGTCATCTGGCGCCAGATGGTACTAAGAAAGTGCTGCTTTCAGTAGTTTCTTTGGAAGTTTTGCTCGAAAGTCACACAAGCAACGAGCAAAAGAAAGACTTAGAGCTTCGTGAATATCAGAAAGAGCTAGCACGTCCAGCCATGGAGGGAAGGAATGCCATCATCTGTGCTCCAACTAATAGTGGAAAGACCTTTGTTGCTATGGCGATAGCTAAACACCATCTTGTACAGTTTTCAAAGAAAGATGATAGCGAAGAATTGGGTGCAGCCGCTGCCACAAAAAGCACAAGTAATGGAAAGCCAAAAGTAATTTTCATCGTCAGTAACCTGGTGCTACAGCAGAGGAGCCGATTCGAAGAATACCTCACAAACTACAGCATTTCCGATATATCGGGCAGTAACTCCACAGAAATCCCCCTTGACTTCCTCCTCAAAACCCATGACGTCATTGTATTGACTGCTCAGATACTGTTGAATGCCCTGCAGAAAGGCTCAGTCAAGATTTCCCAGATTACTTTGCTGGTGTTTGACGAGTGTCATCACACAAACAAGGATCATAATTACAACAAGATCATGCAGAATTACATGGCGTTAAAGTATCAGAGCGATCCGAACATAAAACTACCACAGATCGTTGGCCTGACTGCATCTTTTGGGACAAGAAGATCTAACACAACTCAAAATACTCAGAACTACATCTTACAGATATGTGCCAACATGGACGCATCGTGCATCAGCACCGTGAGAACGAATCTGAAGGAATTGAAGAAGAACGTTACCGGAGGTGTACCAAGACGCAAACTGGAAAAGGTTGACCAGCAACCCAACGTTTTTGAAAACGTCATTGTCCAGGTAATGGAAAAGATTGAAATTGCTGCACAAACGGTGTCCCCGACCTCAATAGTTACAAGTATACCGCCTGCTGACAGAGTTGGTCAGCAGTATCGCCAATGGGTGGAAGGCATTGAAAAAGAAGCGATAAGCAAGGCATTACGTGATCTGTCTACGTATGCAAAGCACCTTAAAAGATACCATATAGCTCTACTAATCAACGACACAGTCCGTACGAAAGACGCCATTCAGTATCTTCAAGAATTCTTTGACAACCTTGACCAAGGCAAGTTCCTATCATCGGACAAAAAGCTACAGGAACTGTTCGAGAAAGCTATAAATGGCATCAAATCCCGCATAGAAAAAACTGAACCAAAGAATCCAAAATTGGAAAAGTTGAAAGAGTTGATCTTGAAATTTTACGAAGAAGACAAAGTCAAAGATCGAAAGGGCGAGACTAAAGGTATCTTGTTCACAAAGACCAGAGATTCCACGAAAGGTTTGATGGGATGGATACAAGAAACAGACGAACTCAAGTCAATTTT

Transcript

Protein

Uniprot

Uniprot term	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Q9GLV6	Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan