Gene detail

Detailed information of KXJ08264.1 in Exaiptasia diaphana

Genomic Location: LJWW01000577.1:14482...21756
NR annotation: XP_020911285.1, collagen alpha-1(III) chain isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ08264.1

ATGGATTTTACAGACATTCGCGAAGATGAGCTAGTTTCAAGCCTYGGTGTGGATTTTGAACATGGTCGAAGGCACATGGGACCTAGACCTGGTTTTCGCCCTGGATTTGGTCCTCGACCACACCATGGACCCATGGGACCAGGACACCCTCATGACTTTCCTATGCGTGGACCAAGAGGTCCAGAACCCTTTTATGGGCCCCCTTTAGGAGGTCCAAGAGGACCRAATCAAGGTCCCATGATGAGAGGAGGACCAATGTTGGGAATGAGAGGTCCCCATCCACAGCATGGAATGCATAGACCAAGAATGCCTGGGCATGGTGGAAGGCCTGACTCRCAAAGAGGTGGRAGAAAGAGACCATTTCCTGGACAACAAGGTCAAAAGACAACAMCAGATAAACAAAAGAAGAATGTCAAAACAACTACTCYTAACGACAAAAAGGAACAGCCATCTTCAGATAATGCTCAAAACAAGACTGAAGGTGATACTTCAAAGCCAAAAGACTCAGAACATCCAGAAAGTGACACTGATGTGGATAAACTATTGAAAAGTGACGATGAAGGAGAAGGGGAAGCACAGGCTGACCTTGATGCTGTCAGTATCCATGGTGATGAAGATATTGATGAAATTGACAAAGAAATAAAAACAACAACAACTTCAGAGAAAGATAAAACCAGTACATCTGAATCAACAACCAAAGCAGGTGAAAATACTGGACAGAAATCCAAACGTGAAAGATTCCCTAGTGAAAGACCACGCGAGGGAAGAAAGCCAGACCAAGGCAAACAAGGCTTTGACAGGAAAAACGATAACAGAAACAGAAGAGATTTTGGTAGAGGCAGGGGACGTGGTAGAGGTGGCTTTGATCATCCCCCACGTTTTGATGGACCRCCACCCATGCGCATGGAACCCCCAATGCAAGGTGGACCTATGATGCGTCCTGGTATGCATGGACCAATGTTTAATCCTAACATGCCACCAAGAATGCATCCTCCTGGTGACATGCACCCTGGGCCTGCACCATTCCCAGCAGGACCAATGCCTGGGCCCCCTGGACAAATGAGGCCTCCTGGTAAAAACATCCACATTAATCCTCATTTTAAACCTGGTAGAGGAATGCCTGAAGGCCCATCTATGGGGCGTCCTGGTCCACCAATGCATGGCCCTGGGCCAGGTCCCAGAATGATGCACCCTCATCCAAGTCATGGCCCTGAACCATTACCRGCTGGACCCATACATGGGCCACCCCATGGTGATATGGGACCTCCAAGGGGAATGGCACCAAGGATGGAGCCACCTAGAGGAATGGATTCCGATCAAAGGTCTATGCATGATATGGGCAATAGACCAAGAGAACATCATGGACCTCAAAATGGCCCTCCTCCTAGAGGCATGCCAATGGATGGACCAAGAGGCCCTCAAGGTCCTCAATTTAGAGCACCACATCCAGGAGGMCTAAATATGGGTGGTCCTCAACCTCATGGGGGTATGCCTGGAGCACACTTAAGAGGACCTGGACAAGGATCACGGCCTATGACACCTCAAACACATCCCCATCCAAGTATGACTGGAATGCGACCACCTCATTCCTCTGCTAACATGCCTCCACACATGGGGCCAACGCCTGGTATGACACCACTTGGAGCAGACACCCAAGCAATGATGGAGTCTAATAGAATCGTTGTYGGTGAYAGAGTGATTGTTCCCAATATGGACCAGTCMATGCATGGACATATGTTTGGTGGTCAGCCTAATGCTTCTTCWGGTGGTAACATTGGTGCAGCGGCTGCAGCGGCAGCTGCCGTTGCTGCTGCAACACGACAGTATCCTGGATTCTCTCCATTTGACTACTCTATGTTTAACCCTAATTGGCAGTTATTTCAACAAAGGGATCCTTATGCYACKGCTGCAGCATCTGCTTTTAATATGGAGACAGAGAGGCCAAGAACGGAYGCAGCACATCGCAGTCGTAAAGGCAAGCGTCACCGTTATACCGATGAAGAAAGCATTGGAAGTGACCTTAGTAGTAGGTCAAGGTCATACTCACGCTCACCATCAAGATCGTATTCCAGATCACCAGCCAGATCATGGTCCAGATCAAGATCGCCATCTTTATCGCCTTCAAGTGTTAGGTCTTCTAGATCAAGGTCATTCTCCAAGTCATTGTCAAGATCTCCACCACGATATTCAAGACTTGGAAGATCTCGGCAGGACAAAGAGGACAGAAAGGATAGAGGAAGAGGATTTGACAGAACTAGAGGTCGCCCAGTAAGAGACCATGAAAGAGATACACGCCCAAGAGATGTAAGGCCAAGAGAAAGAGGGTCTCGGTTAGAAAGAGACAAACCCAGAGAAAATCGAAATAGTCAGCATGACAGAGAACAAAGAGAAAAGGAACGGGAGAGGGAAAGAGAACGAGAAAGAGAAAGGGATAAGCAGAGAGATCACAGACGTGAAAGAGAAAGAGACAGCGAAAAGAACAGTAAGAACAGAGAAAGRGAACGTGAGAGAGGAAGAGAAGATAGAGATCAAGATCGACCCAGAAGAAGTCGTGGTGAATCCAAACACTCAGAATCTGGCTCATCCAAGAGAATTGTAGTTGGTCCATCAGAAGGAAAGTCCAAAAGCTCTTCTACTTCAGACTCCAAGTCCAGCAGAGTTGTAGTTAACAAGAGTTCAAGTAGCGGTAAACCAACTAACCGTGTTGTTATTGGCTCCCTTCCYGACTTAATAACACCAAGCAGACTGAAAGAACTTCTTGCTGGAATTGGTCCTATACAGCAACTGAAAATGTCCACTACAAAGCATAAGGCCTTGGTGACGTTTGAAAAGAATGAGCATGCTTTGGCCTGTCGCCGCAAATTCCACAGAACTGTGGTTGATGACTCTCAAGTCACAGTGGACTTCCTCTAA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039878	Family	RNA-binding protein 33	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22014	RNA-BINDING PROTEIN 33	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19720	COL3A; collagen type III alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala