Gene detail

Detailed information of KXJ08410.1 in Exaiptasia diaphana

Genomic Location: LJWW01000564.1:27835...34876
NR annotation: KXJ08410.1, Aggrecan core protein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ08410.1

ATGCTTAACCGAGTCAAACGCCTTGCTAAAAGTTGGCTCGCGTTTGATAAAGTACACCAGCCTCTATTCAGTGAAAAGAGACAGATATACTTTCCCAACAAAGGAAGTCCATCAGTGAGAAGTAATGGAGCTTTTTGCAAGGATGTCAAATACATCAAGAGTTACAGTTTTGTGCCTGTTGTTATCTTGTCGACCAACCATACACAAAGACAGGATGCAAACAAAGCAGTCTGCGATGGAGTTTCAACGTGGATCGAGTACCTAAACACGACAGGATTTCGTGTGTGTGTCAAGGAACTCTACACCAAACAATACGAGCCACTGACAATTAGCTACTTGGCATTGGCAGATATATGTGATCCAGGATGGAGATACTTCGATGGAGTTTGTTTTCAGATCAGCTCTTCGTGTGATACTTGGTTGAATGCAGAGAATCAGTGCAGGTCATCACAGTCACACCTCGCAACCATCAGATCTCAGCGAGAAAACGTGTTTGTACAACAACAGCTCAACGGTGCCAAGGGCTGGTTTGGCTTCAATGACAGAAGCGTTGAAGGAGATTTCCGATGGTCGAGTAAACTGCGAGGGAACTGGACCTACTGGGAAGTCAATCAACCTGATAATGCAGGGAATCAAGACTGTGTTCGCACTCTTGGTGTTCATCACGACTACCGCTGGGACGATGTTTCATGTACTGACTGCCATAACTTTACTTGTGCTAAAGATATTGATGAATGTTCAGTTGATCAACACAGTTGTCATGGTGATGCTATTTGTACCAATACGTACGGATCGCACACATGTCAATGYAAAACCGGTTTTACTGGAAATGGTGTGCAATGTACTGATATTGATGAGTGCTCAACCTCTCCTTGTGATGTGAATGCCACGTGCTCTAACGTCCAAGGATCTTATATCTGTCAATGTAACCATGGTTACTCTGGGGATGGGTACACCTGCACTGTAGGTGATTTCAACTTTCATGTTGATGATGTCTCGGATTCATCTGCCATAAAGTTTCTTAATCTACTTGAGCTTTTCATTTTAACACAACATGTCAAAGAAGCCCCTCATCGTAACAATCATATTCTTGACTTAGTCATTACTAGGGCTCAAGACAACGTTATTTCCAACATTACTGTTTCTGATCCATTGATTTCTGATCACTGTGCTGTTTCTGGTGATCTACGGATAAACAAGCCACCTTTTCCAAAGATTGTTTCTAGAAGACGTAATCTCAATGCTATTGTTAAGGAAAAATTTTTAGATGACATCTGTAATTCCTCACTATTGCATTCTACTTCAAATGATCTTGTATCTTTTATAAACCAGTATGAGTCGGATTTATCTGTTATCCTTGATATCCACGCTCCCTCTAAGAATCGTATTATCACGTTACGTTCTCCTTGGTACTCATCAGAGATTAAATCACAGAAAGCTAAACGTCGAAATCTTGAGAATAAATGGCGAAAATCTCGTCTGACAACTGATAAACAGTTATATAATGAACAATGCAATGTGGTTAAAAATCTCATCAAGTCATCTAAAAATGAATATTACTCTAATATAATAAATGAGCACAAGGGAGACCAGAAAGTGCTGTTTTCTACTTTTGAGAAGATGACTCACAAAAATGGTAATAAAGAGTTTCCATCAGCTTCTTCCGACAAGCATCTTGCTAATTCGTTTGCTGACTTTTTTGTGGAAAAAATCAAAACAATTCAAAGTAATTTTGTCAACGTCAGTTGTTACCTGGGTAATCAGCCTGTTTTACTAAACAACAGTCTTTCATTTTTTTCTGAGGTTTCCACTGAGTATGTCTCGAAAATTATTTCTCCATTAGTATCAAAGTCGTGCAGTCTTGATCCTCTTCCTRRCRAAGCTTTAAAACTTTGCATARATCARTTAATCCCGATTATTACTAAAATAATCAATCTTTCTTTGGAGAATGCATTAATGCCTTTACCACTTAAGCTTTCTGTTATTAAACCACTTCTTAAAAAGCAAACCTTGCCGTCAGAGGAGTTTTCGAGTTTTAGACCGATTTCAAATCTAAAGTTTTTATCAAAAGCCATTGAAAAGGTAGTGGCCACAGCTGGTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P16112	Aggrecan core protein OS=Homo sapiens OX=9606 GN=ACAN PE=1 SV=3
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
Q61282	Aggrecan core protein OS=Mus musculus OX=10090 GN=Acan PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan