Gene detail

Detailed information of KXJ08483.1 in Exaiptasia diaphana

Genomic Location: LJWW01000556.1:41806...55028
NR annotation: KXJ08483.1, Sterol regulatory element-binding protein cleavage-activating protein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ08483.1

ATGGAAGAAAAAGAAAACTCAGAAGACGTAGAAGAAGAACAAAGTTTGTATGATAGTATAAATGACTTGATTGCACAGCTGTGGTATCARCATGGGTTATTTTGCGCCTCGCATCCTAAACTGATCATATTTTTCTCATCGATGGTGATCTTAACGTGCAGTGCACCACTTTTTGGATCATCTGCATTCAGCATYCCAACAACTGTGGAAAGCACAACTACAACAGCATTGCACTCTGGGAATGAATCATCTTTACCTCATTGGTTCGATGGCAAACCCTTTATGTATATAATCCAATTTGTCCTTACTGCCAAGCTACCTGCAGTATTTCCAACACAAAGTCATGATGGTATACGGCAAGCATTAAAGCCTGCACTCTACGTCACAAATTTTATATCTGATTTTAAAGACAAAGAAAGTGGGCARGGTATGTCAGATGTTTGTCTCAATGTATCCTCTGGGACTTTAATAAGACAAAGRTCAGGATTGCATGTTCAAGACAGTAAATTCTTACCAGCATCTGGATTTTCAAGAGACAATGAGCTGTTTGATGATATGTATCAGAACTTTGGSAGACCAGCATTTAATATCTTACTKAAAGAATTTATTTTTGGAACATCACTCAAACATACTGGTTTATATCCCAAGTTACAAGGTTTTGGTCCCAATAATACTATAAACTATGCTGTTACATTGGTAATGACAACAAATGAGCGCAGATATTTAGCTGCATTGAAGAAAAAATTGCAAAATATATACCCAGAATCAGTACAATCAAGAAATTCTACTGAGAACAAAATTGACAATAAAGTGCTCCATATCTACTATAAGGATGATGGTGGTACTCTAGTTGAATTGGGCTCAATAAGTGTGGCTTATTTTGTTGTCTTTCTTTATCTTGCCTTTTCAGTTGCTAAGATTGACATGGTGAAATCAAAGTGGGGATTGGCTTTCAGTGCCGTGATAACTGTAGTTGCATCACTTGCCATGGCAGGTGGTTTATCAACTTTTTTTGGTCTTGTGCGTACCATACACAGCAGACAGTCAGCTCCCCATATCCTACCTCCTTTACCTATGGACTCTATCAGGAACCCACCCCAGTGCCCTGTTATGCCTGTCAGAAGCAAGAGACTCAAGCTTGTTAATTTTTGGGCAAGAACCCGTATGGTGCAGCGTGCCTGCATGGTGTGTGCTGTGCTGTATTTTATCTACATYRTGTTTTATTCYGTGACACCAAGTACTTTYCGCAACTTGACGTCAGATTCACCTGATCAGGAATCTGGAGAAGAAATGTCTTTGAGCAAAATYATTRAAAAGATTGTTGCAGATCATGACAAAGGGTCTCAAAATGTTTCCAATATGGCCACAGAGAAAGAACATAACGACATGAAATTATCACACAGCAAAGATATACCAAGTAGTAATGATGGTTGGACAGGTTTGACAAAGTACCATTGGCCACAGTTGTTAAGCTACTACAACACAAGTTTGTTAGGGAGATACATTAGTATCCTACCTCCTGTCCATCTTGGCTTTACGATTGATCTTCCATCATTTACACCTAAAGATGAAACAGCAGATGTAAAAGCAACACCATTCCCTGAATCCTCAATCCATGGTCCCGATCCAAAACATATGCCTCTTAATTCCAGAGACCCAGAGTATTACCTAAATGCTCTCAATTGTGTTGTTTTGGGTGTGATAGTGATGATAGTKTTATTCTTTGTGTGTAAATATCTYAATGACTTGCAAATTCGGCCAAAGTCAAGGTCCTTCAGAGAGGTAGGACTTCAATATGAAAACTTGGTCGAAGCTGTACCTCTGAGCCTTAGAGGTCACCGTCAGAATGTGGAACACATGAAGTGCACTGCATCAAGCATAGTGAGTATTTGCTTGAGTGGTCAAGTTCGAGTTTGGAGTAGAACCACTGGGGAATGCCTTAGAGTTATCCAAAGAACCAGTGAAATTCCTTCATCTCGACAAAGATGTGTCACAAAAAAGAAGCTTAAATATGATTCTGATAAAACGCATACAAGATCAAAGTACGTCAAAAGTCTAGAAAATGGCCATGGTGATACATCAATGAATGCCTCGCTACCAGATGTTTTGTTATATGGCAACAACGCTGAATTGGATAGCTGTGTTGAGGTCAATGGGCATCAAAGTCCTACAGCTAAAGAGCCAGGCAGCCAAAGCCGCACTGGTTCTGTAAGTTCTTGCGTAAGCGAGAATTCAGGTTATGATTTTGGACCATCGTGCCAAGGTGGCTCTCCAAAGATAACATCATTTGGGTCGTTACAGTCACTGGAAAATTCTTGGTCAAGTGAGGAAGACCTAATATTTTCTGGCTCTGATGAGCATTTAAATAGTACACAAAATGGCACACTAGATGAATTCAGATCAGCTTCTGTGTGGTRTCTTGATTGTAAAGATGATATCTTGGCGACAGGATGCAGTGATGGAGTTGCTGAGCTTTGGAGTCTCAGCTCGGGGAGKCAACTTTGTCTTTACARCGAAAAAAGTAGTGGTATTACAARTGTTGCATTCCTTCCTGATAGTCCTGTTTTGGTCCTGKCTCGACTGGATGGTACTTTGGATTTTTTGACTCTCCTTGATCCTACAATAAGTACCAGAAACAACATTGCACCTTTCAAGCGTTCTTCTCCTAAAGTGTTCCGAACGCACGACGCCGCTCGTATCTTCACTCTTCACGGTCACAGAGATGGTATAACCGCTTTGACTGTTCTACAGAATGAACCAAACTACGCGATAAGTGGTGCATCAAACGGCGGCGTACGCGTGTGGGACGTTACAACTGGAGAATGCCTTCTACACTTACGAGGTCACACATGCTCAGTGATAGCCCTTGCTTGTACAAAAGACCACATCATTAGCACAAGCATTGATAATTCTATGTGTATATGGGACAGACGAAAAGGCAAATGTCTTCACTACAAACTAAAACAGTTTCCAGATTTCTGTTCAAATATGGTCATGATGTCCAGTAACTTGTTTGTAACTGGTGGACAGGGTTGTATTGCATTGTGGGATCTTCATACAGGCAAGCAGATCAAAACTATTCCTTTGGATGGTGGTGATCGCTCTGTTATTGTACGGAATATCAATGTCAGTGACTCTGCTAGCATCGTATGCAGCTACGGAAAAGAACTGCGCATTGTTACGTTTCCCTTCGTAATGAACAAAGTGGAGTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
A0JPH4	Sterol regulatory element-binding protein cleavage-activating protein OS=Xenopus laevis OX=8355 GN=scap PE=2 SV=1
A6QM06	Sterol regulatory element-binding protein cleavage-activating protein OS=Bos taurus OX=9913 GN=SCAP PE=2 SV=1
P97260	Sterol regulatory element-binding protein cleavage-activating protein OS=Cricetulus griseus OX=10029 GN=SCAP PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12349	Sterol-sensing	Sterol-sensing domain of SREBP cleavage-activation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR030225	Family	Sterol regulatory element-binding protein cleavage-activating protein	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR000731	Domain	Sterol-sensing domain	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46378	STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0032933	Biological Process	SREBP signaling pathway	Interproscan
GO:0032934	Molecular Function	sterol binding	Interproscan
GO:0032936	Cellular Component	SREBP-SCAP complex	Interproscan
GO:0045540	Biological Process	regulation of cholesterol biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26682	SCAP; sterol regulatory element-binding protein cleavage-activating protein	-	Membrane trafficking	ko04131	deepkoala