Gene detail

Detailed information of KXJ10190.1 in Exaiptasia diaphana

Genomic Location: LJWW01000428.1:141525...161416
NR annotation: KXJ10190.1, Chromodomain-helicase-DNA-binding protein 1-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ10190.1

ATGCGCTACCGATGCGCTACCAATTTGAAGCGTAATATTCACGACGAAAACCCAGTTGCATTTTTAGACGTGGACTTCCACAGGAAGCCCACATTTGCCAGTCCTTTGAAAGTGCTTACTCTTGTGGGTGATAAAGATGAACGTGAAGCTTTGAAGAATTCAGTACAACCTTCAATGGGTCAAAGTGACTTTTTCAATGTTCTTCTGACAACATATGAGTTCAAGAAAGACTTCTCAATATTGTTAACAGGAACACCAGTACAAAACAATCTCAATGAGTTATACTCCTTATTATCATTTGTGGCACCTAAAATATTTAAGGAGGATTTCCAGGAAGAATTTGTGGACAAGTTTTCAGACATTAATAGYTCATCAGGAAAATGTGCAGACCTRCAATATCTTTTGTCACCTTTTCTTCTTAGACGAGTCAAATCAGAAGTAATGAAAGACCTTCCTCAAAAGACAGAGGTGATACTTTATACGGGGATGACTGACCTACAGAAGAAATACTACAAGGGTATTCTGACTAAAGACATTGGAAAACTTTGTGTCCTGGACAAACTTTTGTCGTTTTTGCACAAAAGGGAYCATAAAGTGTTAATGTTCTCTCAAATGACAAGAATGCTAGACATCTTACAAGATTATCTTGGATACAGAGGATTTACGTACGAACGACTTGACGGTTCCGTACGTGGAGAAGAACGATATCTTGCGATACGTAMCTTTAACGAGATGGACGATACGTTTGCGTTCTTGCTTAGTACTAGAGCTGGTGGACAAGGACTTAATCTGACGTCTGCAGATACCGTGATCTTTGTTGATAGTGACTACAACCCACAAAATGATTTACAGGCAGCGGCAAGAGCACATCGACTTGGACAGACAAGGCCTGTCAAGATCATTCGTCTAGTGGCGCGAAATACCGTGGAAGAAATTATTTTGARGCGAGCTGATGACAAGCTAAGGCTCACTAATAATGTCATAGAGGGAGGTCAGCTTGGCGATATATTGAAATTTGGTTTGGATAAACTTTTTGACTCGGATGAAAATGTAATAACAGACAAAGACTTTGAAAGAATTCTTGGTAAAAGCTCGAATGGGAAATGGGTTGTAGWGGAAWCGACAGCGACCAAAGACATAGCAGAAGAAAAGTCTAGTGAAACCGAAGGTACAAACATGTATGTTTACGAAGGTCATGACTATTCCAAGGAAACAAGTGACCGCGATAAAGATGCTTTTGATAAAATGATTTTGCAGCCAAGTATTTTAAATTTACCTACACGGAAAAGAAAAGTGTTAACTGCAGAAGAGTTAGAAGAACGAAGAAAGAAGAGAGAGGAAAATGCTGCAAAAAGAGAAGAAGCAAAAAGAAAGCGATTGGAACTTTTGCGGAAAGAGAACAATTACAATTCTCTTAACATCACCCTGAGCGAGGACGACGAGGAAGGTTCAGAAGAAGAATTAACTGACGAAGAAGAGGAACGACATGGCATTCAGTACGTCAAAGGAGACGTTACTCAACCKATAAATAACACAGGAAACCCAGCCATCATAGTGCACTGTGTTGACGATTCAGGGCACTGGGGAAAAGGTGGACTTTTTACTGCTATTTCACGTCGCTCGTCTTCAGCTGTGCAAAGTTACGAATTGGCCGGTGCCATGGAAGATCTTCATACCGGAGATGCTCATCTTATACCATTTGACGAAGACCAACAACAAAGACAGCAAARCTATCTTTCGTTGATTGTGGCCCAAACACGTGACAARCACCATCGTCTTTTACCGATGAATTTATCCGCGTTAAGCGAAGGCCTTGAACGAGTGCACAAAGCTGCCAAGCAATTAAGCGCCACCGTTCACCTTCCACGTATTGGTCACACAACGCCTGGTTTCAACTGGTACGGCACTGAACGCCTTATAAGAAAACACCTTGCATCGAGAGGAATTCCTACTAGCATATATTATTATCCACGTAAACAAGAAACCGTGAAAAAGAGACCAGATCTCTCGTCTAGCGGTAGTGACGCGTCCGATGATAACGAAGGAACTTCGGCAATGCCTCGACGGAAGCCGAAAAAACCTAGAGTTGCGTCCGACCTAAGTGATAACTCGTCCGATGAAAGCGAAGGATTTCCAAAAGGATCTCGTCGCTATGGGAAACAGCCTCGAGCTATGTCCGAACTCAGTGATAACTCGTCCGACGAAAACGAGCGATCCTCGGCTTCTCGTAAACTATCGAAACAGCACCGATTATTTTCCGAATCAAGCTCGTCGTCACTACCCGACTTCTTCTCTGGAGTACGAATTTACTTTAAAGACGTTCCTGAAGAAAATATGAAGACATTTGGTCAAATCATCGGTTGCTACCCGGTATCTGACGAGATTCGCAGATTCCATTCGAGTGCTGGAGACTATGACACAAATGACGTCAGTCCAATCCGCTGCGTCCAACTTTGTGGTGCTAGATATAAATACGCCGCATTGCAAGATGGGAACATTTGCCTTTGCGCAAACTCAATACCAACATCCGGGAAACTAAATGACGCTGATTGTAACACTCCATGTCCCGGATCTAGCAGTTGGCCCGACTCGGCGAAGTCTCTCCGATGTGGTGGAAAGAACAAAAACAGTATATACTCGGCTGCTGCTCGTATTCTCGGGTTGACTCTGCAACCAGTGGAGAGCTTAGGAATTCTGAAGCCAGTATACATTTACGGAAATCTCTCGAACGGAATAAACGTGTATTACACATTCAACCTGGGCGACGGGACACAGGTAACCAAGCCATCAAACCAGCCAACTGCCAGACACATTTTCGATCAGCCCGGATCATATGTTGTGACGTTTATTGCGTCAAATACCATGTCTGGATCTGTGTCGACTTCGGAAGTCTATAAAGTTGACGATCCGATTTCTGGAATGGAGCTTGACTGCCCTCGGTCAGCTAAAGTTGGTCAGGTTGTCGAATGCTTGGGAAGTTTAGCCCGTGGATCTCGTGTAAACACTACATTTGGATTTACTTCTGGACATTCCGAGCGACTGAGCATCAGTGCGCAGTATTACAGCACAGGAGCCATCGTGCCTCGAACGAACGATACAGTTATCAGCGTTCCGCTCAAGTTGGTAGGAACCGTCATTATACCAGCTTTTGAATTCCAACAGAGTGGGAAAGTAACACATTGGGATTTTGAAGCCGTGAAAACTGGCTTTCTTACGCTCATGATTTTTCGCCCTATCTGTAACGCTAACCAAAAATACTGTGCCTCAAGCAAGTCGTGCGTTGCTACCTCCGCAGCATGCATACCACTTCAACAGCGACAGTGCGCTGCAGATGAGATCTTCTGTATCTTCCGCAAGCAGTGTTTACCCAACACGCAGGAAAGCATGAAAACATGTACCCCTTATTCTCCATATAAATTCACTGAACCTCCCGCAGATTACGAACTGGTGTACAAATTTCGAGTAGAGATCAAAACGCTTGGTCATCATATCGAAGACGTTCCTGCTGCGCAAGAACCGTACGTAAAGAAAGGAGACGTGCTTGGAATAGGCCTTGAAAGCGGCGAATTGGGGTATAAGCAAGTTCCAGTCGATCAAGGCGTCACTTTTCATTATTCTTCATCAGTATCTAATGTTGGAGATAAACTCTTACGTACTTCCAGTCCCTCAAAACTCCAAAAACAATTTATCTTTGCAGCTCATTTCGCACATGAGGCAAAGTTTGTTATCCGCGATASGTTTGCGTCGACCGGAATCAAATACGTTACGTCAAACATCACGGAGACACGGTCTGTTACGATCGATTACCCGATTACAAACGTAACGTTTGTTTACCGCAAAATTGCAAACACAAACGACTCGATTGTGTTTACAGTACAACAACATCCAGGCTCCAATACAACGTATTTTTGGAATTTCGGTAACGGAGATACGTTACGTACGCAGCTACTTCAGATTACGTACGCGTATCCTGCTGCGGGTGGATTTGCTGTCAAACTAACTGCTGAAAACTCCGTGAACAGCGCTACTGTCACAAGTGTGATTTATATTTATGATCCCATCTTGAATTTCAAGTTCAGTGAGTGTCCAGTGAAAGCCAAAGCACTCGGAGAAGCGACCACCATTAAATGGGAGAGCGAAAGAGGAACCAATATGACGTACRTAGTGGACTTCGGTGACGCAAGCGAGAGGTATACAGTCGTAACAACAGGCGCAGATAGCCGTAAAGGGCAAACCACACATCAGTACAGTGCATTAGGTAACTATACCGTTACCATATATGGCTATAACCTGGTGGGACCTAACATATCCATAGAATGCCATGCTATAGTGGAGACACCTCTGGTCGGACTTGTGTTTTCAGTCCCTGTAGCTCACGTAACTTCTAATATTTACCTGGCGGTGGGTGACTATATGAGAGTTGATCGACATTTCAAGGAAGGAACCAATATCAGGTGTTCGTACGACTTCAAAGACGGAACATCAAGGTTGATCACACATGAAGTAACTGCCTCGCATAAGTACACCTCCCCKGGTCAATRTAAAGTTGATGTCATGTGTTATAACGACATCAGCTCAATAACTGCGACTCTAAACGCAACGGTGATTGTTGAACAATTAACTGCTTTAAGTGGATTATCTCTAACTGGTCCACCGACAAGAATCACTACAKCATCTTCTATCACACTACAAATTCAGCAAGGCACAACATATTTTTGTGAGTGGGAATTTGGAGACGGTACATCTTTAAAGACAGATGCGTCACATACTGGCAAAGCAATGATCCATACATACAGTGCGATAGATACGTTCGATGTTGTTGTCACGTGTACTAATCGTCTCGGTCCCATGACTGTAAAGACCAAGATTCCTGTGGACACGTCTGTAAAAACAGTAACAATCTCAAGTAGTAAGCGTTATGTGCGTGTTAAAGAAAAAGTATATTTTGACGTGACAGTGAAAGAGGGTTCACGTTTGCTATATGAAATAAGTTTCGGTGACGGTAAAGTATTCGCAGTTCAGCGTAACGCTTCTGGCTTAGCTGTTGCTGGTAAGGAAAGGTTCAGTCATGAATACGACGATGATGGTAGCTTTACTGTAGTTGCCACCGTATCAAACTCACTCGGTAAAGTCGTAGAAACTCTTGCGGGAACAATCRWTGTGCAGTATCCAGTTGAGAATGCTATTTTTGAAAGTGACAGTCCTATTAGCCTTTCAAAAGGAGTTATTTCTTTATACATATCATTCCCGCCAAGTGTCACTCCACCAACAGACGCTCTTTGTGTTTGGAATTTCAATGATGGTACTGCAGTCTCCTCCCCTGAGCCAATGAAACTGAAACCGGAGCGCCGAACACATAAGTATACCAGAGCGGAAACGTTTGTTGTTAGCGTTAACGTAAGTAATCACGTGAGTTTTAAAGTGCTGCAGATAAGTGTTCGCGTCCAGAAAATTAAGGATGTGATAATACTTCCCTTGCGCATGATCAACGAGAAGACTGCCCCAGGCTTCGGACCAGAAGAAAACTTCTTTGGCGTTGACCAGCGTATCATCTTCAACGCAACGTCACAGGATAATGATATCGACTACCGTTTTAAATTTGGTGACCAGACTCAAAGCAACAAGTCAGTGGTTCCATGGACTAGTCATGTGTACAAGAAGGAAGGTGAATACACCGTCAGTGCCTTCGTAACAAATGTACTTGGCGAGCTGAAGTCAACTAAAGTTATCGCTATTCAGAAAGCCGTTGGGAAAGTCAGTGTCATAGCTAGCAATCCGTCCTACTTCACCGACCCAACCAAGTTCTACGTCTCTATTCCCTCACGCGGCTCGGATTCCTGTTTGCTGTTGGCTTTAGGTGATAATAGAGGCGTGTACTTTGGGTCGGAAACATGTAGGCCAAAAGTGTTTCGCTCTAACGAGACATTCATTAGAATATCTCCTGATATGTTGGGCATTAACTACACTCACACATACGCGAACATGGGCAACTATACCGTGGTAGCAACTGCCTGGAATTATGTTTCCATGACCAAGGATTCTACCATTGTTGCGATTAATAGCTATCCTTGCTTACGACCTAACGCTAGAATCGACAATGATGGAACCAAAACCATGCCAAAAAAGATCCAGAAATCAGATGCGTTGGTGCTGAACATAAAGCTCGACTATAATTGCCCTGTAGCTCGTAGCATCATCTTCACTTGGAAAGCTTATGAGGTGACCTTGGCAAATCCTGATGACACCAGTAGACCAGTTAAACTTCCATCAGAAGAAGTGCGGACATTTCCACTTCCACTTCCGGCAAACGTAGACCTTTTGGAAGCTGGTGCAATGACAGTGCAAGAGCGATACTTTCCATTTATGACTCTCAAGTTCTCACTTACGGTTTCCTTCGTTGGAAGGGATCGCGATTTGACACACTTTTCCGCTTCTCATAGCGTATGGCTTGAAGTCGAGCGTTCTGAATTGATTGTGTTAATCAAGGGTGAGTGA

Transcript

Protein

KXJ10190.1

MRYRCATNLKRNIHDENPVAFLDVDFHRKPTFASPLKVLTLVGDKDEREALKNSVQPSMGQSDFFNVLLTTYEFKKDFSILLTGTPVQNNLNELYSLLSFVAPKIFKEDFQEEFVDKFSDINSSSGKCADLQYLLSPFLLRRVKSEVMKDLPQKTEVILYTGMTDLQKKYYKGILTKDIGKLCVLDKLLSFLHKRDHKVLMFSQMTRMLDILQDYLGYRGFTYERLDGSVRGEERYLAIRXFNEMDDTFAFLLSTRAGGQGLNLTSADTVIFVDSDYNPQNDLQAAARAHRLGQTRPVKIIRLVARNTVEEIILXRADDKLRLTNNVIEGGQLGDILKFGLDKLFDSDENVITDKDFERILGKSSNGKWVVXEXTATKDIAEEKSSETEGTNMYVYEGHDYSKETSDRDKDAFDKMILQPSILNLPTRKRKVLTAEELEERRKKREENAAKREEAKRKRLELLRKENNYNSLNITLSEDDEEGSEEELTDEEEERHGIQYVKGDVTQPINNTGNPAIIVHCVDDSGHWGKGGLFTAISRRSSSAVQSYELAGAMEDLHTGDAHLIPFDEDQQQRQQXYLSLIVAQTRDKHHRLLPMNLSALSEGLERVHKAAKQLSATVHLPRIGHTTPGFNWYGTERLIRKHLASRGIPTSIYYYPRKQETVKKRPDLSSSGSDASDDNEGTSAMPRRKPKKPRVASDLSDNSSDESEGFPKGSRRYGKQPRAMSELSDNSSDENERSSASRKLSKQHRLFSESSSSSLPDFFSGVRIYFKDVPEENMKTFGQIIGCYPVSDEIRRFHSSAGDYDTNDVSPIRCVQLCGARYKYAALQDGNICLCANSIPTSGKLNDADCNTPCPGSSSWPDSAKSLRCGGKNKNSIYSAAARILGLTLQPVESLGILKPVYIYGNLSNGINVYYTFNLGDGTQVTKPSNQPTARHIFDQPGSYVVTFIASNTMSGSVSTSEVYKVDDPISGMELDCPRSAKVGQVVECLGSLARGSRVNTTFGFTSGHSERLSISAQYYSTGAIVPRTNDTVISVPLKLVGTVIIPAFEFQQSGKVTHWDFEAVKTGFLTLMIFRPICNANQKYCASSKSCVATSAACIPLQQRQCAADEIFCIFRKQCLPNTQESMKTCTPYSPYKFTEPPADYELVYKFRVEIKTLGHHIEDVPAAQEPYVKKGDVLGIGLESGELGYKQVPVDQGVTFHYSSSVSNVGDKLLRTSSPSKLQKQFIFAAHFAHEAKFVIRDXFASTGIKYVTSNITETRSVTIDYPITNVTFVYRKIANTNDSIVFTVQQHPGSNTTYFWNFGNGDTLRTQLLQITYAYPAAGGFAVKLTAENSVNSATVTSVIYIYDPILNFKFSECPVKAKALGEATTIKWESERGTNMTYXVDFGDASERYTVVTTGADSRKGQTTHQYSALGNYTVTIYGYNLVGPNISIECHAIVETPLVGLVFSVPVAHVTSNIYLAVGDYMRVDRHFKEGTNIRCSYDFKDGTSRLITHEVTASHKYTSPGQXKVDVMCYNDISSITATLNATVIVEQLTALSGLSLTGPPTRITTXSSITLQIQQGTTYFCEWEFGDGTSLKTDASHTGKAMIHTYSAIDTFDVVVTCTNRLGPMTVKTKIPVDTSVKTVTISSSKRYVRVKEKVYFDVTVKEGSRLLYEISFGDGKVFAVQRNASGLAVAGKERFSHEYDDDGSFTVVATVSNSLGKVVETLAGTIXVQYPVENAIFESDSPISLSKGVISLYISFPPSVTPPTDALCVWNFNDGTAVSSPEPMKLKPERRTHKYTRAETFVVSVNVSNHVSFKVLQISVRVQKIKDVIILPLRMINEKTAPGFGPEENFFGVDQRIIFNATSQDNDIDYRFKFGDQTQSNKSVVPWTSHVYKKEGEYTVSAFVTNVLGELKSTKVIAIQKAVGKVSVIASNPSYFTDPTKFYVSIPSRGSDSCLLLALGDNRGVYFGSETCRPKVFRSNETFIRISPDMLGINYTHTYANMGNYTVVATAWNYVSMTKDSTIVAINSYPCLRPNARIDNDGTKTMPKKIQKSDALVLNIKLDYNCPVARSIIFTWKAYEVTLANPDDTSRPVKLPSEEVRTFPLPLPANVDLLEAGAMTVQERYFPFMTLKFSLTVSFVGRDRDLTHFSASHSVWLEVERSELIVLIKGE

Uniprot

Uniprot term	Description
Q86WJ1	Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3
Q3B7N1	Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Q9CXF7	Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus OX=10090 GN=Chd1l PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01822	WSC	WSC domain	Domain	Interproscan
PF00801	PKD	PKD domain	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000601	Domain	PKD domain	Interproscan
IPR035986	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR002889	Domain	Carbohydrate-binding WSC	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR031053	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR022409	Domain	PKD/Chitinase domain	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan