Gene detail

Detailed information of KXJ12962.1 in Exaiptasia diaphana

Genomic Location: LJWW01000301.1:214581...223933
NR annotation: KXJ12962.1, Lysine-specific demethylase 2B [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ12962.1

ATGGAAGGAAATATTGATGCAACCCGAAATCTGAGAAGACAGCAGAGACGAAATTACTTGGATAATAATCAGGACGATGAAATTGAAGGCAAACGAACCTTCAGCGTCGAAGAAAAACTTGCAAGTGCGAAATTTGAAGGGACCAACTTTGTGCAAAAGCTTGTCGGATCTGATTTTACGTTGAATTTTGTACAAGAAGGTGGCTTCAAGACCCCCATCCTCTTTGAAAACCCTGATGGATTAGGAATGAGGATGCCTTTTGATGGATTTACAGTAACAGATGTAAAGAATTATGTTGGGGCTCGAAGACTTGTTGATGTRATTGATGTGAATACCCAACAAGCCTTAGAACTCACGTTACAAAATTGGGTCAAATACTTTACAAACCCCGAAAGAGAGAGAATTTACAATGTCATCAGTTTGGAGTTTAGTCATACGAAGCTTCAAGAAATCGTCGAGTCTCCTTCTGTGGTGCGTCAGATTGACTGGGTRAACACGATATGGCCTCAAAATCTCATCGAAGAACAGACAGACTCTACAAATTCTCTCGCTGATATGAAATACCCTAAAGTTAGGAAATATTGTCTCATGAGTGTTGGAGGCTGTTATACTGACTTTCACATCGACTTTGGAGGGACTTCTGTGTGGTATCATATCATAAAAGGCGAGAAGATATTTTGGCTGATTCCTCCGACTGAAGAGAACCTTCAGTTGTATGAAAAGTGGGTTTTGTCTGGCAAGCAGCAAGATATGTTTTTTGGAGATCAAGTGAAGCAGTGTTCCCGCGTGTTTTTGAAAAGTGGAGACACTTTCTTGATTCCAACAGGTTGGATTCATGCCGTTTTTACACCTGTTGACAGCTTGGTTTTTGGTGGAAACTTTCTACATAGTTACAGCATCAAAGAGCAGATTCGYATTAGTGAAATCGAAGACAACACCAAAGTGCCTCAAAAGTTTCGCTATCCTTTCTATGGGGAGATTATGTGGTATGTCCTCGATAAATACACAARGTTGCTAAAGAAAGACACCGAAGAAAGAAACAAGGCTGGTCCAACGCAAGYAAAATCAGTCAAAACCAAGAAAAAGAGCGAAGAAAAGCGTAGCGTTTCGCCGGACAAGAAAAGTGTGGTWAATGGTGATGACAACAGCAGAAGAAGATCTAGTCGTGTGGCGTCTAARGATACAAAAAGATCCTTCGACGAGCAAGGCTCGCAACCTAAAAAGAAGATAAAACTCGAGAAAACCGATGATGAAGAAAAACCTCASGTCAATGGCGAGACAAATGGCTGTCACAGTGATAGTGAAACCCCCTCGACTGAAACTCCATGGGTCCCGGTGCACGTCACCGAGAAGGAGATCAAAGGATTGGTTAGTTTGATAGAGAAATTTCGTGAGTGGCCACATGCGAAGAAGTGTGTACCACAAACCATTGAAAATCCTGACAAACTACTGGAAGATTTGGAGCAATTGCTATCACAACGAGAAGACGACGAGCATTCATTATCAACTGCCAGCGGTATTCAGCACTTGTTTCAAATCGACCCCCCACCCAAGAAGGAGAAATCACCTCGCCACAAGGCAGTTCCTATGATGTCAAAGTTTGGTACCAAGGTAGGACCAGGTGTTCGTCGACGACGCACAAGATGTGGTCAGTGTGAAAACTGTCAACGGGAAGACTGTGGTGAATGTCGAACATGTAAAGAYATGAAGAAATTTGGTGGTCCAGGAAGAATGAAGCAGTCTTGTCAAAAACGTGTCTGTCTAAAGCCAAACCTACCGACTTGTGTGCGCTGCCTGGAATGTAACGGKTTYAGTGAAGACGACAARCCRTTGATGGAATGCCGACTGTGTGCTGAGATAGTTCACCCTGAATGCATTGGAGCAGAAGAGGACACTTACAGAATAGTACCCGAGATTAACAACTGCTGGGAATGTCCAAAGTGTTTTAACGACAAAGAAAACAAACACGACAGAGAAGAYGATAGTGAACAAGAAATCTCCAACCAATCGGCACCACGAAAACGAAAGGTYCATTAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q640I9	Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1
Q9Y2K7	Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3
P59997	Lysine-specific demethylase 2A OS=Mus musculus OX=10090 GN=Kdm2a PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02008	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF17811	JHD	Jumonji helical domain	Domain	Interproscan
PF02373	JmjC	JmjC domain, hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050690	Family	JHDM1 Histone Demethylase	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR003347	Domain	JmjC domain	Interproscan
IPR002857	Domain	Zinc finger, CXXC-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR041070	Domain	Jumonji, helical domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482	Biological Process	protein demethylation	Interproscan
GO:0032452	Molecular Function	histone demethylase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan