Gene detail

Detailed information of KXJ12967.1 in Exaiptasia diaphana

Genomic Location: LJWW01000301.1:196126...209961
NR annotation: KXJ12967.1, putative ATP-dependent RNA helicase DDX52 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ12967.1

ATGTCGAGATCCTCACAAGGAAACAACCTAGATACCCGTGATCATCTTACGCAAACAGAGAAAGATACCTTTCCTTGTAGCACTGATCTTGACATAATCGAGCTTCGCAGTGAACACMCTCAATCAACAAAAACACAGTCTGATATCCCTACAGATCAACAGTGCGGATTTTCGACGGATTTCATGGAAAATGATGAKGACCTTTTGATCATAGACTTACAGGACGTGGAGAAAATCCTGAGTATGGCCGAAGATCCGACTTCTTTGCAAAGTTTTGATGAGATGAGAAATCTAAACAAAGATAAGAAGTTTGACGAGTGGGTTTATGTTGAGACGAACCGAAAAACTTTTCAAATTCACGATAATCTGCTTCTTCCACGAGTTAACAACGGTAATTTGGATTCCCAAAACCTATCAGAAACTCTTGACTTCTTTGGTAACAAGACCAAGACGGATGAAGTGCCTTCAAACTCTAGCGACATTGAAAAGTCTCATTCAGATAATAGAAAACGAATCTTTGAAACACCTTTAGAYGAAAAGTCAACGAAGAAAAAGAAACGAAAAGCCAAATATGATAATGAACGAAAYGAAGAGCTTGAGGATAAGCAGGGGAAACAATCTAGAAAACAAAAAGCTGAGTTACACATTGAAAAAATAAATGCCTTCAGACAYACRCATAGAATATTTGTCAAAGGCTCAGACATACCTGACCCAGCGGAGAACTTTAATGTGTTACAAGAAAGATACAAATTTGCAGATTACATTGTTAGAAATGTTAGAGAAAGAGGCTATGTTGAACCGACTGCAATTCAAATGCAAGCAATGCCTCTTATGCTTCAGGGCAGAGAGATTTTATGTTGTGCTCCAACAGGTTCTGGTAAAACTGTTGCATTTATTCTTCCAATCTTACATGACCTCAAGAAACCTAAAAAGAGTGGCTTCAGAGCCTTGATTGTGTCACCAACCAGAGAGCTTGCACAACAGATCTATAGAGAACTGTGTCATATGTCTAAAGGCTGTGCTTTCAGAATACACATTCTGACCAAAGCTAAAGCTACTTCTAACAGTTTTGGTCAAAAATCATCAAAACGTTTTGATATTCTTGTGACAACACCAAACAGACTTATTCATCTTTTGTCCCAAGACCCACCAGGAATCAACCTTTCTAGTGTGAAGTGGTTGGTCCTTGATGAAGCAGACAARTTGTTTGAAGAAGGAAAAGATGGATTTAGAGATCAGATAGCAACAATTTACCAAGAATGTAGCAATGAAAATATCAAACRTGCACTATTCAGTGCAACATTGTCAAATGGCGTAGAGGAATGGTCAAGAATACACCTCGATAACTATGTGCAAGTCACTGTTGGCGCAAGAAATGCGGCAACACAAATAGTAGAACAAGAATTGCTATTTGTTGGACAAGAATCTGGAAAACTTTTAGCAATGCAAGATATAATTCACAAGGGAATAAGCCCACCAGTATTAGTATTTGTCCAGTCAAAAGACAGAGCAAAAGAACTTTTTCACGAGTTGATTTATGATGGTATCAATGTTGACGTTATACATTCTGACAGGACTCAAGCACAGAGAGATAACATAGTAAAAAGCTTTCGAACTGGAAAGATATGGGTTCTAATCGCTACTGAGCTAATGGGGCGTGGCATCGATTTCAAAGGCGTTAACTTGGTCATTAACTATGATTTCCCTACATCTGCAGTCGCTTACATCCACAGAATAGGAAGAACTGGTCGGGCCGGTAGAGCAGGGAAGGCTATAACATTTTTTACTGAAGCTGATGTTGTCAATTTGAGAAGTATTGCTAATGTGATGAAGGCGTCAGGCTGTGATATCCCAGACTGGATGTTGAAAATCAAGAAGCCAAGCAGAAATGCGAAAAAGCAATTACAGAAAGCTCCAATCAAGCGACCCGCCATAAAAACTGTGACTAAATATGATTTAAGTAAAGCAAAGCGAAAAAGAAATGTTATCAAAGGATCGAAAGAAAGCAAGACGAAGAAAGAGAAACAATCATGA

Transcript

Protein

Uniprot

Uniprot term	Description
A5D7C1	Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Q99PT0	Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Q8K301	Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR044764	Domain	DDX52/Rok1, DEAD-box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0030490	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14779	DDX52, ROK1; ATP-dependent RNA helicase DDX52/ROK1	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala