Gene detail

Detailed information of KXJ13239.1 in Exaiptasia diaphana

Genomic Location: LJWW01000291.1:241123...243296
NR annotation: KXJ13239.1, Tripartite motif-containing protein 2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ13239.1

ATGGCAGAACTCAATGTGTTTGCGAACAATCTTGAAAGAGAACTCACTTGTTCCATATGTTATAAGATCTTTACCAACCCGAAGACGTTGAAATGTCTACACAGTTTCTGTCTGAAATGCATATCTGACTGGAACGCGTCATGCAGACGGGAAAGACGACCACTTACGTGTCCTTTATGTAAGTCAATAGAGAGACTCGAAGGCAATGACGTGTCTAGCCTTCCACCTTCGTTTCATCTTCAACCTCAATTGCAACTTCTTCGCGATATGAGAATAAGTGCAGACTCTCGAGAACAGCAAGAATTGCCAGACTRYTATGTCAAAAACCGAATGCATTGCAAGAAAAGATATCACGACAACATTAAGTTGGACTTTTACTGTACAACATGCAAAGAATGTATTTGCCTGAAATGTAACGCAACAGAACACAAACTACACCGTACMGTGACCGTCGAAGAAGCCGCAGAAGAAGKTAAAGTGTTCATAATGAGGGATATGGATCGAGTGCAGAAAGTGAAAGAAAATTACGAAAAAGAACTTGATTTATCTAAGCAGAATATGGCAAGATTTGAACAAGAAACTAAAGAAGCAATAAAGAAAGTCAGCGATGAAGTCGAGAAACACATCAAAGTCTTGAAAGAACATAAAGCAGCTGTGATTGAAACCCTGCAGAATAAACTTCAGCAACAGAAAACACAGAATGACGAAGAACAAAGAGAAATACGTGATGGAATCCAAAGACTTTCTGAATTCAACCTTCGAGGTCAGACATTGGTCGATGAAAATGTAGCACATTTCATTGTCAAAAGCCAGAATGATCTTTCTCAAAGATGTGAAACATTTCTTGAAATACAATCAATATTGTCCAGCAAATCAATTAAACGTACCGCAAGTGTACGGTACACACCCAACCAACAAGTCACGCAAGCCCTGCAAGATATTGGAACGATTGTGGAGAGCGTGACAGATCCTTCATGTTGTTCAATTGAAAGTCTAAATGACATCAGGTGTGGCTTTKTCAATCGTTTTGAAKTCGTGACTCGAAATTCCCAKAAAGAACCTTGCGTGACTTGTCAAGGATCCATTGATGTTCAAATCCAAGATGGTGATGGCATTAATGTAGAGAAGGAAGTGAGTCAAAGTGATACTGGGAAATACACCGTGACGTACCRAGCAGAAAAACCATGTGATTACACAATCMATGTAAGAATTGGTGGACAAAAGATYGAGAACTCACCACAGACTCTGAAGACACGTGATGTCAGAGACGAGTTTAAACCTGTGAAAACCTTTGGAGGCAAAGGAAGTGCAAGGGGACAGTTRAATCTCCCCCAGTCACTAGCAGTAAGTGATAGAGGAGAGGTAGCCATTGCTGACTATGCTAATCATCGTATTGTAATATTCAGTGTTGATGATAATAACAATGGTACCGGACGATTACAGGAGTTTGACTTGAATGGTACCTACTGCAGAACTATTTACAAACAGCAAGGTGTTGGATTATCTGGAATGTGTACAACAAATGAAAGCATTGTAGTTTGTTATAAAATCCAAAACAGACCTCAGTCAGGAATAAAAGTATTCAATAAACAATCTGGTGAAATAATGCAAGAAATTCCTTCTGTTAACAATAATGATRTACCTTGYTACATTACTTATGGCAATGGTAAATACTTTGTATCAAATACAAACAGACACTCTATCAGTGTTTATGATAATAGCGGTGGATTTCTCTATACATTTAGAGAGGAAGGAAATGGAGATGGACAGTTCAACGCTCCATGTGGTCTTGCTGTYATAAGTGATGTAATCCTTGTTTGTGATTCTTATAAGGATCGTGCTCAGATACTGAATCAARACGGTCAGTTCATAAGGTCTTTTGGTGGCAGTGGTTCAGGTTTYGGTCAAATGAATTCACCAGTAGATATCACTGTTACCCCAGATGGTCGAGTTTTTGTACTTGAATGTGGAAATAGGCGTGTTCATGTGTGGCGATAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZMD4	Tripartite motif-containing protein 59 OS=Gallus gallus OX=9031 GN=TRIM59 PE=2 SV=1
A6NCK2	Tripartite motif-containing protein 43B OS=Homo sapiens OX=9606 GN=TRIM43B PE=3 SV=3
Q96BQ3	Tripartite motif-containing protein 43 OS=Homo sapiens OX=9606 GN=TRIM43 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047153	Family	TRIM45/56/19	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan