Gene detail

Detailed information of KXJ15649.1 in Exaiptasia diaphana

Genomic Location: LJWW01000216.1:322185...333643
NR annotation: KXJ15649.1, Retrovirus-related Pol polyprotein from transposon 17.6 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ15649.1

ATGCAGTATATATTGAGAGGACTAGAATACAAGTACGCGTTGATATACATAGACGATATCATAATATTTTCCAGAGGCGAAGAACAACACCTGATACATCTAGAGGACGTTTTTGAGAGGTTACGTGACGCAAATCTCAAACTTAACCCAAAGAAATGCGTTTTCGCGAAACAACGTCTAGAATATTTAGGACATATAGTAACGCCACAAGGCATATATCCAGATGAAAATAAAGTTAAGGCAGTTACAGAGTTTCCACCGCCGAAGAATATTAAAGCATTAAGAAGTTTTCTAGGCTTAGCAAATTATTATAGACGTTTCGTGAAGGACTTTTCTAAGATTGCTTCTCCACTTACACATTTGACAAAGAAAGCAGTTAAATTTGAGTGGACCAAACCATGTCAAGAAGCATTCGATCAGCTGAAGCGCGCGTTGACCTCGGCGCCTATTCTAGCCTATCCAGACTTCACAAAAGAATTTCACCTTTACGTTGACGCAAGCTCAACGGCAATTGGTATGACACTGTCTCAATTGGATGAGAAAGGAAATGAACGTGTTATTTCATATAACGGAAGAAATTTGAATAAGGCAGAAAGCAATTATAGCACAACTGAAAGAGAGTTGTTAGCACTTGTCGAAGGTATAAAAAAACATCAAGCRTTTCTTTTCGGTCGTAAGTTTACGGTTCACACAGACCACAGTTGTTTGCAATGGCTCCGTACAGTCCGCGATCCCGTAGGCCGGCTCGCCCGGTGGGCCATARTTTTACAACAATACCAGTTCGACGTTGCTTATCGTCCTGGAAAAAGTCACGGTAATGCAGACGGTTTAAGTAGAAGAGAATACAATAGTTGCGAACTATACGCACTGAACGAACGAAGTGTGATCGCGTCAAGCGAACTAGACAAGGATTTRCACGAGAAAGTTTACAATTTGCAAAGACGCGACCGCGACCTTTCGGACCTAATCACATATCTAGAGACAAACGAGTTGCCAGGTAACGATAAAGCGGCTAGAAAGCTACTACTAAGCGAGGACTTGTTTTATCTAAATGAGGCGGGATTGCTATACAGAGTCGAGCAAAGAAATAGGAGAGAYAAAAGTGCGCCGTTTCTGCAGCTTGTKATTCCAAAACCAATGCGATACGAAATTTTGTATAACTCACACGACCACTTAACTGCAGGTCATTTTGGGACGCAAAAGACATATCAAAAGATAAGAGATAGATATTGGTGGAACGACAAACCACGTAATGTAAAGGTGTCTCCATCACGACTGGTACTGAATGAATCTGAAACATTGAATCTCACCTGTGATGCATCAGCTAATCCTGCTGGAAGCTACTCGTGGTCATTGAATGGCAAGATTCTGGAAGGGGAAACTAGCCGCATGTTGACTAAACACAATATCACAATACAAGATGCTGGAGAATATATCTGTACAGTTACGAATAGCCTTGGTACTGATACTAGTAACAAAGCTGTTGTTGATGTCCCACACATAGGGGCTGCAAATTGTACAGCCAGTCCTGATCCTGTGCAAGATGGCAATAATATCACCCTAAAGTGTTCAGCTTCTGGTTATCCAGCTGTTAACTATAACTTGACTGTGAGAAACTTAGAAGTTTCTGAAAATGTAATAGCTGTCAAGGCAGAAGCCAGTCTCAATGGTGCTGTTATGACATGTAAAGCTGTTAATGAGTTTGGAACCAGGAATTGTACGAAATCAGTCACAGTGCACTATAAGCCATTCAACATCCAAGTGTCACCATCAAGTGTGGTTTTGAACGAAAAAGAATCATTTAATCTCATTTGTAACGCGTCATCTAATCCTCCTGGCGAGTACTCCTGGTCATTTAATGGAAATGTTTTGGATGGTGAAACCGATAAAGTATTAGCCAAACACGACATAACACGTGATGACGCAGGAGAGTATAGGTGTACGGTTACTAACAATATTGGTAGTGGTGCAAGTAATATCTCTGTGGTTAAAGTTCGATATTTGGAAGAGTGCAAGAATAATAAATACACGCTGACCAATGAACAGTGTCTTACCTTATCGCCCGAAGGTTTTCCTAAGCCAACACTAAACTGTTCAAAGGTGGATTTCAATGAGACAGGAAAGAGTTACACTTTATGTAAACCAAAAAACAACGACAAGTGTACAATTTTCAATGATGCTCAAGAGTGTCAATTTGAATACGAAGTACTGAATCAAGCCAAAAAGCCATTAACGTTTCGCGGCTCATTTCGCTGCACCAACCTTGATTACCAACCGCAATATAACGACAAAAATTCTTTTGAGTTCAAGAACAAGTCAGACCAATTTGAGAAAAATCTCAATTCGGTGTATGAAAGTTACAAAATTGTCACCGGAGTGCGTGTAACTGCCTTGGTGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01390	SEA	SEA domain	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000082	Domain	SEA domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-