Gene detail

Detailed information of KXJ16098.1 in Exaiptasia diaphana

Genomic Location: LJWW01000205.1:216006...221208
NR annotation: KXJ16098.1, GTP-binding protein rho1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ16098.1

ATGCGAAGAAGAAGCTCYAGAAACTCGTCAACTAAAGCAAAGCCTAAGTTGAAAATTGTGTTGGATGGCCCAAGTGCAGCAGGGAAATCAGTCCTACTTCGTCGTTTGACCTCTGGTGTTCACATGATACCTGCAACCGTTGGCCACATTCACTTCTCGGATATGAGCGGGTTGGATGGAGGTTTCGTGAACTTGAACCCATCAGAGCACTACAGATATGCAGACATCATCATTGAATGTTTCGACATTAGCAATCCACGAAAACTTGAACACATAATAACTACTAGGTTTCCCTGTTTTCATACACAGTATTCGAAACCTGTTCTTTTGGTTGGACTAAAGAGCGACTTACGGCAAGATTCAACAGAAGCCAGCCATCCTCTATTTCCATGTGAGTTTGGCCCGTGTCTCGCTCATCTTCTTGGCGCAGTGAAGTACATGGAGTGCTCTGCTAAGTCAAACCAGGGTGTCCAGGAAGTTTTGGAAGAAGCAATCCGCATTACTTTTGAAAAGAGCTATGAGTATAGTGGAATTGTAAGTCAGAATTTGAAACGTTTGCTGCTCTCCAAGATATCTATGCATGAAGAGTGGAGGTCGATCATCCAGAATGTGGATCCATCTCAGATGTGTCCTAAAATTGACTCGGTGATGAGAAACCAACTASAATGTCTTGATGAGAAGTTCTGTGCTGTACTATCGAATGATCTGGTGTCTTATGGAGATTTTTCGGCTTGCAGAACTCTAGACATTGACACATTTCTTTTAGAAAATTGCAATTTTGATATCGATTATATTCGAATGAAGTATTCAAAGCCAAGTATGGTATTATGGTGCTCGGAACAGCTTCGCACGGCTTCTTGGAAAGTACGATTTAGCAAACGAGGGTCAGATTTGGCAAAGGGGGCTTTTCCTAAAGAGTCTACTACCTCCATCAGGTTTGCTAGAGAGGATTGTTCTTCTATCACTTCCTTCTTTGGTTCTTGTGGATCAATATATGTTAAGAGTTTAGTTATTATCAGCTGTGATGGAACTCTTAAGTTGGACTTTCTATCAGCATTAAAGAGATTACAAAATCTTATCATCATTGATACTGCAGTTGATCTATCCAAACTCACCTTCCCCTCCAAGGTCATTTCTTCACTGAAGTGTTTCATTCTGAACGAATGCCACACCGACATCCACCAAACTCCTACCGTCATAGGAATGCTCAGCCAGTTAGAAGTTCTAGATGTTACCTGTAGCAGTTTCAAGATGCTTCCAGAATCTCTAAGTCTTCTTGACAATCTTCGCAAACTGCGATGCAACCACGATCAAATCGTCTTTCCACCCAAAAATGTGTTGCAAAAGTCTGCACAGGAAGTTGAAGACATTCTTGACAAGACATCTGAAGACGTTGACATTGTTCAAACATCCAATGGAACCCAATCTACAGAGAGTGACGTTCCGCCTGAAGAATCTACTGACCAACAATCTGGAGCACATGACATTTCCCCGAGAGAATCGAATGAAAACCGAATTGGAGCAACTGAAGTTCTCCCTAAATATTCAAATGACATCGGACCTGAAGCAACCGAAGTTCTTTCTGAAGAGAATAAGATTGGATTAGAAGAAGCGGATGATCAACCTAGTATTCCACATATCCTAGGAATCTTTGAAGTTAGCGGTGTTACCAACAAAAACGTTAAAAGTCTCAAGCGTCAACTGCAAAACTCAATTCAGAAAATCAAGCTCCACACTAACAGTGAACATATTCCACGTAAATGGCTTGCTTTTCGAGATTCAGTGAAGTTTAAGCTTTCTCAAAGCGAAGAGTTAGTAAAACAGCCTATTCTGGAAATATCACAAGTTTACAACCTGGGATATGAATCACAAATAGACAATCAGAGTACTATAACAGCTATGCTCCGATTCTTCCATGCACAAGGCGATTTTCTCTGGTATGAAGACTTCCCAGTCATGAAAGATGTTGTCATTCTGGAGCCGCAATGGCTTTCGAACCAACTCCGGACCCTCATATCTCATCTACCACATGTTGATGCCGTCTGTGAAGGTATCCTGCACCATTCAAAGCTGCCAGAGATTTGGAAAGACATGACAGAAGAAAACCGATCCAGGTTGATCACTCTCTTCAGGAATGTGGGATTGTGTTTCAGTGTTTCAGGAGTGGAAGATCTCTTTCCTTGCAGCTTGCCTGTTGGCTGGCCTAATAGCGAAATGTGGCCGTCGCTACCCAAACCCAATGAAAGCCAAACAAGTCTGTTACTCACATTTAGTTTTCTTGCTMCATCTTTCTTCCCAGATTTGATTGTGGCCATCAATGAGAAAAGAGCATCTTTTCCTTCAAATGTGCAACCTTTGTACTACCGCTTCAACGTAGTTTACATTACAAACGATGACCATAGGTGCCCACGTCACACTGAAGACCGATTGATGAAAACTGCAGGTGCAAAAAATGGAACCCAAGACGCAGTGGTTTCTCATAGAATTCACTTCGAATTGATGCCCTACAAAAACACCATGAAGGTAACAATACGTGGTCCTCGTCCTTGCTGCATGATTCCCGATGTCGAGTCTACAATYGAACTGGTGAAATCACGACGATATCCTGGTATGACATACGATGAACGAGTTGTCTGCCCGGAATGCGACATGAAAAAGCTTCACAGTCCATGTACTTTAGCATTTGATGATTTACATCATGGGTTTTGCAACAAAGGACACAAAGTTGGCAGCATTGACGACATCCTAGAAGGGAAAATGAGTTCGTCTGATCTTATACCATCGGCAGTCCTTCAAGCAGSAAGAATAATGGGTGAAGTACTTGAAGACCACTATTGCCCCAAACTCTTTGCTGTTTTACCCATCAATCTCTCAAGCCTTTCTCTGAAAGATCGTTTTGTTCATTCCTACCTACGAGATGGATTCGCAGTTCACCTTCTCTGTGAAGCTCCTGAAGAATGGCACTTTTTATCATCTCCTGGATTCCGTGTTGGGAAACCCAAAGAGTTTTTCAAAACACATGGCGGAAGAGTTTGTAAGCTTCTCCGAGTCATCTCAGCTCTTGGAGCTCCTTTCCAAATCGCTTCTGCCATTGATCCTCATTGTAAAGTAGGCGTTGCTGCAGCTGTCGGAGCAGAGAAGATGCGCAAAGAGCTCAAAGATCTTCTTGATGACTACCTTAAGAAGTACCCYCACTTGAAATCTTCACTACGGTCACCCAAGGATGATCTAACGGATCTCAAATCATCTGATGGTCTTAGCCGTACTGAACTTTCTCGTTTTTTAGAAGTAGCAGCCAAAGGACGAGACTTTGGACCTTTGACTTGCACGTATGTTGACAAGTGCAACGAATGGTTGTGGTTATGTGAAGAACACAATCAGAAGTACGCGATTGTAAAACGATAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q09914	GTP-binding protein rho1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rho1 PE=1 SV=1
O00212	Rho-related GTP-binding protein RhoD OS=Homo sapiens OX=9606 GN=RHOD PE=1 SV=3
Q9HE04	GTP-binding protein rho5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rho5 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11592	DICER1, DCR1; endoribonuclease Dicer	EC:3.1.26.-	Chromosome and associated proteins	ko03036	deepkoala