Gene detail

Detailed information of KXJ21900.1 in Exaiptasia diaphana

Genomic Location: LJWW01000089.1:30696...38185
NR annotation: KXJ21900.1, T-box protein VegT-B [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ21900.1

ATGTTTCCTTTTCTCGAACTTTCTTTCGCTGGACTGGACCCCARTGAGATGTATATGCTTCTTGTCGATATGATACCGGTCAGCGGCTATAAGTACAAGTACTCGGAACGCCTACAGCAGTGGGTGGAGTCTTGCAACMCACTAGGGTCGGGTGCTATAGGCATTTATAAACACCCTGATGGCCCGTTTAGAGGTTCAGCTTTGTTAAAGGATCCAATCAAATTGAACAAGGTCAAGTTGACTAATACTTTTGATCGTATCAAATATAATCAAATTCTTCTTGAGTCAATGTGTCGTTTTGCTCCTCGAGTCACCGTTATAAGGCTTAGAGATTTTGCCAACCACGAAACTTCCAACGCTGCTGTTCTCACTTTCAAAGAAACTGGATTTATGGCTGTAACAGCCTATATGAACAAACAGATCACAAAGCTTAAGATCGATAATAATCCCTTTGCTACTGGTTTCCGCGAGGAGCGGTTTAGCCATTTGCAAGATAAAGTAACTCACGGTCGAAATAAAATGAAACAAGCTGACAGTCCTCAATTCAATCAATATTGTGATTTCCAAGAGGATGTTTCTTCTGAAGTCAGTCAAGATGAAGAAGTTTCGCCTGACGACACCTCTAGTGACATTGAGAACATTGATACAGGTTCTGATGTACTCATGTACTCGGTATCCACTGGCGAAGACTCGGGTGACAATATCCAAGTACTTCACGTCAATCCATCATCAATCATAGTGACTGATGTACCGCCTTCTCCATCAACSTCTCAACCAGAAACCCCTACTCCAACCTCACCAACTATACACTATAACATTAACCTGGCCAACGGCTGCTTAGCAACAGTAAATGGTGACTTGGTTACGAGAAGTGATTCTATGGAAACAAAAGGTGATGCCTTGGCAACGACAAATGGTTGCTTGGTAACTGTAGATGGAAGCGTAAATACGAAGTGTGATGTTGTTGAAACAACACGTAGTGCCCTAGTAACGACAAATGACTGCTTAGCAACTGTAGATAGTGGCTTAGATGYATCAACAACTGATTCTACAGGGAAATTATGGACTACCTTGGACATGGGAAATGGTTGCTTAGCAACTGAAAGTAGCAGCTCATTGACAAGAAGTACTTGTGCAGAAACAACATACAGTGTTTTAGCAACGGAATTTGGTTGCAGAGCTACGGGGTCACAAGATTCCACTGCAACAACAAATGGTGAAAAGAGTGAATCACAAAACGTACTCGTGTCCAAGGACATACCGGCAGGCTTTATAGCTTTAGAGTTTGCAGAACAMTCACTTCAAGCAGGACAAAATACTATTAAAGTCAATAGAGAGCCGACTGATAGCTCGATTTGTTTAGTGACGAACGTCAGAAGCATAGCAAAGCCTGATGCTGGGAAAACTGMGGACGTTGAAGACGTGACGCGTGACAACCGAAGACAAGAACAAAGACCAAGTGACATACCASTTCATGGTCCGTCAAAGGACAACCAAAATCAAAACGAATCTACAGACAGACCTGTTAGGGTTAATTATTTTGATAATGAGAGTCAAGGAAATGATAGTGACGACATTCCTGATCACTTAAGAAAGGACACGCAGATATCTAAACTATTGGAGTTCGTKAACTCTCATCCTATGGATGTCTTTAAAAACGTTTTCTTAGAATCACCGGTTGACGATTCGACTTCGGAAGATTTCTTCGTTGGTGAAAAACGTCCTAGTGTTGAAGACCATGCAAATACCACAWGTAAGAAAATAAAATCCRRTGAACAATCAAATTGGGYAATGGAAAACCAATCTGTTAGCAAGTCAGTGATGTGCACTGTTGCTGACACYGCAAATGTGACATTAAAAGACAACCAGCTACATATTACATCCAATARTATTTCAAAGTCACGTGATTTTGAACCAGTCGTAAGCAAAGGAACGGAAGATAATGGGATTCTTACGCTTGAATGTAACGAGACGTTCGATTATGAAAAGGACCTCACTGATAATGCMAGCAGCAACTTAGTACAAAAGGATTCAACGTGTCATTCAAAAGGTAGTCATGACAACACKAGTGGCTATACGAACGAAAAAGGTCACTCACAGCAAAATGTTGACATTCAGCCAAGGTTYATATCTAAGGAAGGTTTGCATGCCAAGTCAGTCGTCAAACAGAAACCCGTTCAATTAACAGACAGTGACATTCAAAACGCCATCAAAAGCGTGGAATGTAAAAAGTCGATCGAGAGCAAGACTCATTCTTCAGAAAGCGGCTCGCATCAGTCCAATCCAAAGGTCACCAATTATTTTTTACCGATTGCTTTGGGACAGAGTAACAATTATCCTTCAAATCTGCGAGTACATGAACGAAGGACAAGTGGCACAACTCCAGCAACAAGTATTCCGTGTAGCATGGGTGCTAGTAGTGATGTAGAGGCTTGCGAGTCGATTAATGGAGAACAGTTCCCTGTTATACTGGAAACATACAGTCTTAACACTTTGCTGCAGCAACAGCAGCTGCAACAGCAGCAGCAACGACAACAATGCCAACTTGGACAGCAACAACAACAGCAACTTGGACAACGTCTGCAACATCCACTTCTTGAGGAGCAGTGTCTCACACAGCAGAGTCAACAGCAATTACAGCCGCAGCAAGAGCAACAACGGCTACAGGATCAACGTGTACTGCAACTGCAACAGCAACGTGGGCAACTACAACAGCAGCTGCCACAAATACAGACACAATACTTAACACAACAGCAATACGGTCAACAGCAGCATCAACAACGTCAGCAGCCAATGCCACAGCTACAACAGCGACTACTAAATAATCAACAACAACGATATGAACAACCATTACTTTATCGGCAGCAAATCCAACAACAACAGCAAAAACAACAACAACAACAGCAGCAGCAGCAAGTATTTACAACGCAGCAGCTACAGCTACAACAACAACGAGCTCCAGAGCAACAACAGAAGCAGAGCCTACAACAACAGCAACAAAAGCAGCAACTTATACAGAAGCAGCAATTAATACAACAGCAACATCAACAAAGTCTACAGCAACAAAAACTGCTAATACAGACGCAACAGCAGCTACAGCAACAACAGAAACAAATCCAACAACAACAACAACAACAACAGAAACAAATCCAACAACAACAACAGCAGCATCTAATACAGAAGCAGCAAGAACAACAACAACAACAACAACAACGACAACACCAGCAGTATCTTAACAACTTGAGTATACAACGTTATCCTTCTGTAACGACAAACAGCAATGACAATGGCATTCAAGACAAAACCAAATCGCGTAAAAGAMATTTAATACCAAGACCAACGTATTCAACGGCGTTATACGACAGAAATCTAGCGACATTCATCGACGAACATAGAAAAACAGGACTCATGAGTCAGGTTGACAAGAACGAAAATTCCAAACAAGAACATTTATTCTACCCTTACGCCGAGGGYGTGTTTGATTCAAATGACTATGCTGAACAGTGCAGAAACTGCTATCTTCCACCCACCGATGTTAAACTAGAGGCTTTATACACATTTGGATCGGACTTTTCGCGGTCGAGAGCGCCCGATCCTCGCCTTCCAGAAATTTATTGTCCAACTAGAACTACGTTTACRTGTTATTCGTATCACGTGATCTCCAGTGAGTTACCCATAATTCCACAGTACGCTTATACTGGTAATGCCATGAGATAA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
O13161	T-box protein VegT-B OS=Xenopus laevis OX=8355 GN=vegt-b PE=2 SV=1
Q9ES03	T-box transcription factor TBX20 OS=Mus musculus OX=10090 GN=Tbx20 PE=2 SV=3
P87377	T-box protein VegT-A OS=Xenopus laevis OX=8355 GN=vegt-a PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan