Gene detail

Detailed information of KXJ23295.1 in Exaiptasia diaphana

Genomic Location: LJWW01000069.1:943630...963216
NR annotation: KXJ23295.1, Tetratricopeptide repeat protein 28 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ23295.1

ATGGCTAMATTTGGGAACTTAGAACCTTTTGAAGGAGGAGATTTTACTTCGTACAAAGAAAGATTGGAAGCTTTTTTCGTGGCAAATAATATTGGAAAATCATACGACCAATTATGTGCTCTACTTAGTAATTACTACAAGCCAAAAGTGTCGGAGGTTGCAGAAACGTATCGTTTTCATCAAGCAATACAGAATGAGAGTGAAAGTGTTTTGGAATATTCAAACCGATTAAAGCATCTGGCCGTACACTGTAATTTTGGAACTTTTCTACCACGCGCTTTAAGAGATCAATTTGTTGGAGGAGTGAGGAATCCTGCTACAAAAACAAAGTTGTTATCTGAAGATAGAACTTTTGATCGAGCTGTTCAAATAGCTACTGCTGATGAAGCTGCTCAAAAGGAAGCCAAACTACTGCAAACTCATTCTGCAAATGTAAATTATACGAAAGGAAAGCAATTTCAAAAGAAGCCAAAGGATAACAAGGACAATGGATGCCAGCAGCCATGCATCTATTTYTCCAATACCACACACATTATRGCTGTAGAATCAAGTTTTGMTCACCACCCAAAGGTRATAGTTTCCAAACTCAATCGAGCAGTGGCACTTGATGTCCACGTYAATCATCAAWTGATCTTCTGGAGTGATRTCMACAATAAATCCATCAAYAGAGCAAACATTAACGGGAGCAATATTAAAGTCATCGTGAAAGACAACATTGGGGTATGTGATGGGCTWGCTGTGGAATGGGTGAACAATCTTCTTTACTGGACCGATACTACAAACAACAAAATCGAAGTTGCGCGTCTGGATGGATCAAAAAGAAAAGTGCTGTTCTTTGAAAACCTTGATGAGCCACGTGATATTGCCGTGGATCCTAAATCTAGGCTTGAAATCCGGAATCCAATGTTTCGGAATCCGGAATCCAGCGCTTGGAATCCGGAATCCTCTAGTTCTCTGGATTCTCTTACATGGGGCGATTCTATTCAGCTTTTTGGAGAGGAAACTGAGAGCAATCATTCTTGCAATGGTTTCTATTTGTTCCATTCTAGCGAACACTTAGAGCAAATTCCTGATATTTCATCTCTCGATCCACAACTTATGCACAACTTATACACGAAAAAGGAAYTAGGATGGCGTCACCAACTTTTTGCCGTCAACTTGATAGACATTGTACGTGGTACTGAAAAAATACTGGACACAATTTTACCGAACGACCATCATTTTGAGAGTTTATCCTGCTGCATCGAGATCATTTGTCACAMAATGGATGAAAAGGGATCAAACCTCGAAATGTACAAAGACCAAGTGAAAAGAGCCATTGAGAAAGGAAATAAAAAGGAGGAACTTTCTKCACTAGACAACCTTGGACAAGTTTATATGTCACTACAACAGTTSATTGAAGCAATTCAGTGTCACACGAACTTGGCAAATGTTGCCATAGAGTTAGGGTTAAGCATTCCAGAGGGAAGRGCATAYTATAAGATAGCTCACGCACATAGCTCGTTAGGTAATTACAAGAAGGCGATAGAGTATTAYCAGAAGTGCCTTCACGTATTGCAAGGAAAGGGAGATAGTGGCATAGAAAGAATGACATATTGCAATCTAGGAAGTACCTACTTTATTAGCGGCAACACGCAGTACGAATATAGAGAGTCAATCAAATATCTAGAAASAAGCCTTTCCATGGCATCAGAGGCAAATGATGTTTATGTAGAGGCTAGGGCATGCCATAATTTAGGTAACASCTACATGGCTTTAGAAAAATATGAAGAAGCGATTTCATTCTACGAAAGAAGTCTGGAACGTAGTGATGGTAACAAAGGTATGGCTTATCGACTGATAGGAGATGCGTWTWTTCAGCTTAAAAACTATCAAGAAGCAATCAAAAATCACAGTTACAGCCTTGAGTACGCTGTCAGGTATGACAACAAAGAGGCACAGAAAACAGCCTACTTATGCTTAGGAACTGATAGCCACASCATGCGTCATTATGATAATGCAGTGTCCTATTTKCAAAAGTACCTGAATATGGCTAAAATGCTAGGAGAYAGAAGAGGGGAAGTAGAAGCACACAGGTTYATAGGTAATGCCTATTTTGAAATGCAGAAAAATGAGGATGCATTGGTATGTCACAAAAGTAGCTTAAGTATAGCGGTAGAGATAGGAGACAAATACGGGGAGGAATGTGCATATGTAAACATAGGAATTGCTTATAAAAAYTTAGAGAAATATCGAGAAGCCATAGAATGCTACGAAAAAAGATTGAATATTGCAGTGCAGAAGGGAGATAGGAAGGAGGAAGGTAAAGTAGACAGTGATATTGCCAGAGCATACGCTSGTTTRCGAAATTATGAAGAAGCTATCGTATATCACAAGAAAGCTCTCCAAATATCAAGAGAAATTGGAGACATCAGTGAGGAAGCAAGAGCCTACTCTAATATAGCTGATGTCTTTTCTTCATCAAGCAATTACAGAGAGGCTCTCGAATATCAAGAGAAATATCTCCAAGTCGCTATTAAAATGGGTGATAAAGAGAGTCAAAATAAAGCATACARCAMTATGGGAGTTTTAAATGGCAAAATGAATCGTCAAAAAGAATCGATCGAATGCCTTGAAAAGCAATTAGAAATTGTTCTCGASAAAGGCGATGCGTTAGCAGAGGCAAWCGTGTATTGTAATTTAGGCAATGTTTACGTAGCGATAGGTAGATACCAGGAAGCGTTTCAGGGGTATAAGAAATGCCTAGCCATTGCAGTAGAATATGAGGACAAACATCTACAAGAGTTAGTGTATTGTAACATAGGTAATGCTTACCAGGCGCTAGGAAATCCTYTGGAAGCACAGAAGCATTACCAAAAAAGTGCAGATTTAGCAATAAGTAGCGGAGATCCAGAGGCAGAAGCAAGAGGGTACTGTATTTTAAGTCGTATAAGYAGCCATTCCGGAGATTACRAAAAGGCACTTGAATACGCTAAGAGACAACTTAATATAGTTCAATTGTTAGGAAATAAGCATGAACAAGTATTTGCTTACCATGATCTTGGAAAAAAYTCCTTTYWTATCGGAAAATTTCAAGATGCCATTCAATATCTTGAAAGAAGTGCAAACTTAGCGAACGAAATCGGTGACAGAAACGCAGAAGGRAAAGCATATGAATACTTGGGATATGTTTATCAAGACTACAAAATGAACTATCCAAAGGCTGTCCATTATTATACAGCAAACYTCAATCTCGCTAAGGATGTTGGCAACAAAGAAGCAGCCGGAAAAGCCTGCAGGAACCTTGGAACTGCTTTTCTCTTTCAGTTTCTTGATGGAAAATCCGTTGAACACAAGGAAAAAGCAGAAAACTTCCTTATAGAGAGTCTTAAATGGTACGACTTGCTTTTCCAAGACATCGGAGAACAGGATCAACACAAGGTCAATGTAGTTGATACCTTCGTCTACACACACAAACTACTTGTGGAATTCTACATCGAAACTGAACAACCTGAGAGAGCACTACTGGTGTCGGAGCAGGAACGAGGACGTGCACTGGAAGACCTTTTGATGAAAAAATACAAGATCGATAAGAACGACCTCGACACACATTACGACTTTCTTGGATACGCTGACATCGCGAACAAAGTGCTTTCTCAAGATTCTTGCATTTTGTTTTTCTCTGATCTTATGAAGATGAGAAGAAGCAATTTTGAATTGCAAGTTGGAACATGGGTCCTTAATTTAGACAGTCGTGTGTCGTTTTATCGGAATGAACTTAAAGACATCAAACAATTACTAAAGGAAAAATCTCTCGAAAAAGACATTGATCAGGACAGCAAGGATGTCCTTCATGACATAGTTGATAAAACCTACAAGACAATGTCTACTAGAGGAACAACAGTTGAGTCTAGAGCTGAGAATCGCTCATTCAGCCATCATTTAATTRGTTCTTTTGACAATGATGAAGGCTCGATGCAAGAGTTTAAAAACAGCAAGAGAAATACTTATGATGAAGAACTYGACGATGATTACTTCGAAGTACTCTTTGGTGCATTGATYACTCCAGTACAGGATAAGCTGACCCACGAAGAGATTGTTATCATCCCTGATGGACCTTTGTTCAAAGTCCCATTCGCAGCTCTACGAGATCCTAAGACTCAAAGATATTTGTCAGAGACTAAACGTATTCGAATTGYTCCCTCTCTTAMCAYMTTAAAGATCCTGAATGAATCCTCTCCAGAATCACACAACATGAAAGGTGCACTCATCGTTGGCGATCCTGACGTCGAGGGAAAAAGAATGTTGAAAGGYAACGAAATATTTTTYMATCSATTACCAAATGCTCGGCTCGAAGCAGAAMAGATTGGTTGTATTCTTGGYGTGAATGCACTAACAGGAGCAMAAGCAACCAAGCAAACTATCAAGGARCGGCTCAAGGAAGGTGTTGCTGTCATTCACTTTGCAGCACATGGATGTGCAGACAGTGGAGAAATAGTACTCAGTCCACCCGAATCTCTAAAGGGCACACAGACCAYACCCTCAGAAGAAGACTATCTGTTGACAATCAACGAAGTGCAAGAGATTGGACTACGAGCAAGACTTGTTGTGTTGAGCTGCTGTCATAGCGGTCGTGGTGAGATCAAGTYAGAGGGTGTGATTGGAATGAGTCRAGCATTTCTTGCTGCCGGTGCCCTTGCTGTTGTGGCATCCTTGTGGGCGGTAGAGGACCTTGGTACGAGAGTGTTTATGCAGAAGTTCTACGCACATCTTAAGCAAGGGAAGAGTGCAAGTAGAAGTCTCCAGCAAGCCATGAAAGAAATGAGAGAGATGGTGCAATACGAAAAACCGAATTTCTGGGCTCCTTTTGTCCTGATAGGTGATGATGTGACTGTGAGTCTGTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF12770	CHAT	CHAT domain	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR024983	Domain	CHAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan