Gene detail

Detailed information of KXJ23316.1 in Exaiptasia diaphana

Genomic Location: LJWW01000069.1:227917...254629
NR annotation: KXJ23316.1, Integrin alpha-8 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ23316.1

ATGCTCATTCTGAAATGTTACTACAGCTCATGGCTGTTTTTATGGTATCCCTGTGTTGACWGTCTTGTGATACAAGAATCCAAAATGGCGGGTATGTCAGCAGTGAGTGCAGGAGCAAAAGGTCGCCTTATTGCCGTCATCGGGGATGAAGATACGTGTACTGGTTTTCTTTTGGGGGGAATTGGAGAGATCAATGCCAAAAGACAAAAAAATTTCTTTGTCGTTGGCAAAGAAACGTCTGTCAGTGAAATTGAAGACAAGTTTCGTGAATTTGTGAATAGAAAAGATATTGCTATTCTTCTTATAAATCAGAATATTGCAGAGGAAATACGTCATGTGTTAGACGGATATGAAAGTGCAATCCCTGCTGTATTAGAAATYCCGTCTAAAGAACATCCATATGATCCATCAAAGGATTCCATTCTTAGAAGAGCAAAGGTAWAAAGAATTGTTGATGTCAATTATTCTTTGTGGGTTCTTGTAGGTGCACCAYTAGCTAATCAGACGGTACCAACTGGTTCACGGTATAAGGTTCATGAGAGATATGGTACGGTTTATAAATATAATACTAGAGATTTCCTGTACAGTTACCGGTCAGACGGCTTTTGTCAAGCAGGATTTGCCGCCTCAGTCTTTAACGATGGTCAGACGCTTGCTTTGAGTGCTGTTGGCAAAAACTATGGGAGAGGATCTGTCGGGGTTCATTTTCCTGATACAGAGGAAACAATATTTGCCTCGTCATCGGATGTAAAGATGGACTACTTTGGTGACTCCATGGGTTATGCTGTTACAACGGGACAATTCATGCCACGTTATGACGAGCATCTTCTGGTTGGTGCTCCACGATACAGTTACGATGGTGATGAAGGGCGTGTGTTTGTCTACGTCAATAATGGACTGGGAGCTTTGAATATCATGGATGGAATGACACTTGATGGAGATCGACAACCMAAAGCAAACTTTGGATTTTCAATYGCTTCAGCTGGTGATCTTAACAAAGACAGCTACAATGATGTGGTGATTGGTGCACCTTATGGTGGCGATGACGGACGGGGTGCAGTTTACATTTACCATGGAACGAAAAAAGGCATTGACACCAAGTATAGGCAGAAAATCAGTGCGGCCATGGTTGGTGATAATAAACTGGCTTCCTTTGGTTACTCCCTGACTGGTGGAGTCGATGTGGACGATAATAAATATCCTGATATAGCTGTTGGAGCCTATTYGTCTGACAGGACAGTTCTATTAAGAACCAGGCCAATTGTAAAGGTACAAGCTAAAATCGAGCTGAGCACAAACCAAATCGTCCTAGAAGATAACAAGACTTCAATGTGTAACTTTGCTGATGGTTCAAGGCACAAATGTTTAACTGCAAGAGTTTGTTTCAAGTATTCTCACAAAGTGCCTTTGAATCAAGGAATTGATCTATCCTACTCTTTGACCCTCGACCAAGACATGCATTCAGACTTTCTCAGAAGGATGTTCTTCCTGGGRAAAAATGCGTCTCAAAAAGCTTTTATCTGGATGAGCAACATCTCTATAACCAARCAAAATGAATGGAAGTGCGAGCCCGTGTATCGCGTCTATTTGAGGGAAAGGGAGCGTATCGGAGATCTGCTGTCACCGCTAACGTTCGACGTAAATTACGACCTTGAGTTAAATGCACCTTGCACTGTTTGTCCCATACTGGACGACTACGACGATGTTCGACGAAGATCTGCACGAGCAACGATTCAGTTTCAGAAGCAGTGTGGAAAGGATCAAGAATGTGTACCTGATATGGCAGTCAGCGGTCGTGTTTCATTTCTTGGTGGTTATAAAGACCTTCGTATCGGTGTATCAAACGAAATGAATGTGTCAATCACAGTGCTCAACAAGGCAGACGATTTTGCYTACCCTGGAATGGTTATAGTTACCTACCCCTCCCTACTAGGGTACATTGGTACAGAAACTAAGGGAGTTCGRTGCAGTAGAGTCACATTTGAAGACAAAGACACCGAAAAGGCAGAGTGTTTTGTTGGAATGCCTTTCGTTGGCAAATCAAAGAAAAAGTTTGATTTGAAGTTCACAACATCAGAAATCAAAGGCGATATTAGACAATTCCAGATTGAACTCTTTGCTACCAGCCCGAGTCGAGACGCTGATCCATTGAATAACAAAGTCAAGCTTTTGGTGAACGTCAAGTTTGAAGCTGATTTAAGTATTACCGGGTCGTCGGTGCCCGATCAGGTGGTCTATAATGGAAAAACAGCAGTCCCTCTTAAAGACATCAAGAAAGAGAAAGACATCGGCCCTGAAGTGTCACAGATCGTCATAGTTAGAAATAACGGTCCTAGTGCAGTCGATGGCTCAGTTGTAAAGATTAGCGTCCCATGGAAACATAACAAAGATGACCCTGAGAGCTATCTGTTGTATCTTCTCCATGTCATGGTTGAGGGCAGTGCGGCCAGTTGTGACGTTATCACTAATCCTCTCAACATCAAGACTAAGAACTCAACTAATGTAAAAGCACCTGGTATCGTTGATAAAAGACTCACTTCGTCAATTACGGACCAGAGAACTAAACGAGAAAACAAAGAAACGGACTGCAAAGCTGAAGAATGCCTCTCTTTCACATGTCAACTTGGTCGACTTGACAGTGGGAATGATGTCAAAATCATAATGACGTCACGAGTTTGGCAAAATACCCTTGTGAAGGCTGATGTTGGCTCTATTGATCTTTTCACGTCAGCAGTGGTATCTGCCCCTTCATCTATCACCGAGCCTAATAAGGGCAAGAACAATCACGTGACAATTGTGCTTCGAACGAATCCAAAAGATAGCAAAACACCTACGGAGTCTACCCCTGTGTGGATTATTATTCTGTCTGTATTGGCTGGTCTTATTTTACTCGCATTGGTCATATTTGTTCTTTATAAGTGTGGGTTTTTCAAACGAAATCGCGCTTCTCAACAACTCAACAACGACGAGGAAAAAATGTCGAGTGAAGGAAAATATGACGCAGCGTCCCAGCAGGATCAGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
P43406	Integrin alpha-V OS=Mus musculus OX=10090 GN=Itgav PE=1 SV=2
P80746	Integrin alpha-V OS=Bos taurus OX=9913 GN=ITGAV PE=1 SV=3
P06756	Integrin alpha-V OS=Homo sapiens OX=9606 GN=ITGAV PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01839	FG-GAP	FG-GAP repeat	Repeat	Interproscan
PF08441	Integrin_A_Ig_1	Integrin alpha Ig-like domain 1	Domain	Interproscan
PF20806	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan
PF01990	ATP-synt_F	ATP synthase (F/14-kDa) subunit	Family	Interproscan
PF20805	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR000413	Family	Integrin alpha chain	Interproscan
IPR032695	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR013519	Repeat	Integrin alpha beta-propellor	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR013649	Domain	Integrin alpha, first immunoglubulin-like domain	Interproscan
IPR048286	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan
IPR008218	Family	ATPase, V1 complex, subunit F	Interproscan
IPR005772	Family	ATPase, V1 complex, subunit F, eukaryotic	Interproscan
IPR048285	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR018184	Conserved_site	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Interproscan
IPR036906	Homologous_superfamily	ATPase, V1 complex, subunit F superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220	INTEGRIN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0008305	Cellular Component	integrin complex	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0033180	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan
GO:0005178	Molecular Function	integrin binding	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan