Gene detail

Detailed information of KXJ26514.1 in Exaiptasia diaphana

Genomic Location: LJWW01000029.1:604008...617796
NR annotation: KXJ26514.1, Breast cancer type 2 susceptibility protein-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ26514.1

ATGTTTGAAATGGAAAATCAACAACCGAGTGCTGCCTCTTCAAATTGTAAACCGTCTTCCATGACAGGATTCAAGACTGCAAGTGGCAAAGATGTCAATATCTCAGAAGAAGCTCTGAAGAAAGCAAAAGCCATGTTTGAAATGGAAAATCAACAACCGAGTGCTGCCTCTTCAAATTGTAAACCGTCTTCCATGACAGGATTCAAGACTGCAAGTGGCAAAGATGTCAATATCTCAGAAGAAGCTCTGAAGAAAGCAAAAGCCATGTTTGAAATGGAAAATCAACAACCGAGTGCTGCCTCTACGAATTGTACTTCGTTTTCCACCTCAGGATTCAAGACTGCAAGTGGCAAAGATGTCAACATCTCAGAAGAAGCTTTAAAGAAAGCAAAAGCCATGTTTGAAATGGAAAATCAACAACCAAGTGCTGCCTCTACAGATTGTACTTCGTCTTCCATGACAGGGTTCAAGACTGCAAGTGGCAAAGATGTCAATATCTCTGAAGAAGCTCTAAAAAAAGCAAAAGCTATGTTTGAAATGGAAAACAAACAATCAAGTACTGTCTCTGCGAATTGTAAACCGTCTTCCACGTCGGGATTCAAGACTGCAAGTGACAAGGATGTCCTGACTATCTCTGAAGAAGCTATGAAGAAAGCAAAAGCCATGTTTGAAATGGAAAATCAACAACCAAGTGCTGCCTCTACAGATTGTAAACCGTTTTCCATGACAGGATTCAAGACTGCAAGTGGCAAAGATGTCAATATCTCTGAAGAAGCTTTGAAGAAAGCGAAAGACATGTTTGAAATGGAAAATCAAGAATTTAGTGCTGGCTCTGTGAGTTGCACATCGTCTTCCATGACGGGATTGAAAACAGCAAGTGGTAAAGATGTCAGTTTCTCAGAAGAAGCCTTGAAAAAAGCAAAAGCTATGTTTGATACAGACAATCAAGAGCTTAAGCACACGTCAACTAAACTTTCAAAAACTGTTTGCGCAGAGAAAAACACTTGTGTAAAAGGGGCATACCAGACATTAACTGACGTRAAGCAAGATCAGGAAGTCCCTTCAGAAAGCAAAGCAAAGTTACTAAATTCAAGCTGTCAAAAAGCACCAATACATGTTGAGAACACCAAAACGCCCTCTAATTCCCCAGCTACAGAMATAGACGACCATTTAACAAGAGAGATTTTAGAAAGTTCTGCTGCGCTACTTGCAGATGAGTCATTTACTGACCTTACCGATTGCCTTGGTCACGAAGAGAAAACAATTCCTGTACCAGTCAGAATTCCAGAGAAAGTAGAGCGTAGTTCTGGTGRTAAGGTTATGAGAACTCCATGTCACTCAGAACCATATCTAAAGACAGTTCTGTTTGACCGTCGATCAAAGAATTCATTGGCGCCCGCAGTTGTTGGACCCAACATGTCTACTCCTTTATCGAGGATTCCCTCGTCAAGTATAAGAAACAGGCAACAATTTACCAGACAAGCTAGTYCTTYACATSCACGAGTATCCTCTCCATCACTACCTTCACCACTAGCCACAAATAACAAASAAACACAGAGATCGTCTCCAAGTATTGGGCCGTCATCCAAAAAGCAATTTACRACACCCTTTAGATCACCCAGTGGTAGTGTACCCAATACAAATCTCAGAGAGACATCCGATGGATCTCCGAATAAAAAACGAGCAAGAATCAATGGTCCCGATGGCTACAAAAACGACTACCGTACAACAGAGAATGTTAAGCCTGTCATGGGCTACCTGTGGAATCAGTACCAAAGTAATAAACGACTTTCTTTGAGGCAATTTGTTGATAACACACTGCCACACAGATATACTATGAAACAGCTTCAAGATCTTGGTGTCCATGATGACGTTATAGCRGTCACGTGTKGTAACGCAGAGTCGTTTCGTTTCATTGGATCGAACTTCTTCAGTGARGGGATTTGTTCATCTAATCAGGGCGTTAGAATGGAAGACGGAGGCTTGTTGTATATAGGACAAGATGGCAGTATTGGGCTTCAAGAAATAGAAAAGGCTATGCTGAGTACACCTGGGGTTGACGCTAAGTTACTACCAGAAGGCTGGATAGCTAATCATTATAAATGGATTGTCTGGAAACTCGCTTGTATTGAAACGGCTTTCCCCCAATGGCTCGCTACCAAGAGCCTTACCCCAGACCGGGTTCTCTGTCAACTCAAGTATCGATATGACCGTGAGATAGATCGATCTCACAGAACCTTATCTCGCAACGGCGTTGTAAAACACTTGCTGGAGTATTCCACGTGCACTTATAGGTTACGGGAGGGCGAAAAATGCGAGGAAAGTTTCTGGAAGGGTAATACACTTTGCAGTGGCGTTGGTGTTGATACTGTGATCCAGGTAACAGATGGCTGGTACTCTATCAATGCTGTCTTAGATGCACCTCTAACTGACCTCGTGACTAAAGGAAAGATATTCGTTGGTTTAAAGCTATGTATTAATGGCGCTGAGTTGATTGGYTCTGAGCAGGCTGTCTCACCTTTAGAGGCTCCATCGACCCTTATGTTACGAATTAGCGCAAACTCTACCCGAAGAGCACGCTGGGACGCACGACTGGGATTTCAAAGATACTCGCACCCATTCCCTTTACCACTGTCATCACTTTTTCCTAATGGTGGATTGGTTGGCTGTGTAGATATTGTTGTTGGTAAACGTTACCCAATTGAGTACATGGAGAAGGTGACAGGCGGAGCAACAGTCTTCAGAAATGCACGAGCAGAGGAACGTGAAGCTAAAAAGTTTGCGAATAACCTAGAACGTTCCCGAGAGGCTGTGCTTGCTAGAGTACAGAAGGACTTCGAATCATGTGAAAACAAACCTCAGTGTGCAAAGAAATCGCGACGATCTTATTCTCCTAGGGATATATCAAAACTACGCGGCGGGAAGGAATTGTACGATGTATGTATGTCGGCGTCTGATCCTAGCTTTATCGAGGAATGCCTCGATAATAAACAAAGAAGAACTCTCGAGGATTACAGACGGTCAATRCAGGATACCAGACGAGCAAAACTTGAAAAGATGTTCCAGGAAGCGTGGGAAGAAGATGAAAATAATATCTCTAAAAGAACAGTTGTCCCAATGCTGAAAGTACGGATTGTTAACTACTTAAATTGCGACATGGATAAAACAGCGTTNNNNNNNNNNNNNNNNNNNNNTCTTATTTTTTCCAAGAGTCCTCAAGACCTTGATGAGAGTGGGACCACAGCACTCCACAAAGCTGCAGCGAATGGTCATCTTGAAGTGCTCAAGCTGCTAGTTGAACAGGGAAGTGATGTCAATAAGACTGACATCACAGGATGCTCACCTCTTCATGCTGCGTCACGCAATGGTCACATGTCTTGTGTTAAGTTCCTGGTGGAACATGGAGCTGACTTTAAGCTGAAGTCCATCAAAGGCAATACACCTATGGTGGTTGCCAAAGCCAATTCACAACAGAAGGTAGCAGAGTATCTCTCTACATGTGATAGAGAAAAGTATGCATGGGAAGTACAGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P51587	Breast cancer type 2 susceptibility protein OS=Homo sapiens OX=9606 GN=BRCA2 PE=1 SV=4
P97929	Breast cancer type 2 susceptibility protein homolog OS=Mus musculus OX=10090 GN=Brca2 PE=1 SV=2
O35923	Breast cancer type 2 susceptibility protein homolog OS=Rattus norvegicus OX=10116 GN=Brca2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00634	BRCA2	BRCA2 repeat	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF09103	BRCA-2_OB1	BRCA2, oligonucleotide/oligosaccharide-binding, domain 1	Domain	Interproscan
PF09121	Tower	Tower	Domain	Interproscan
PF09169	BRCA-2_helical	BRCA2, helical	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002093	Repeat	BRCA2 repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR015205	Domain	Tower domain	Interproscan
IPR015187	Domain	BRCA2, OB1	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR015252	Domain	Breast cancer type 2 susceptibility protein, helical domain	Interproscan
IPR036315	Homologous_superfamily	BRCA2 helical domain superfamily	Interproscan
IPR015525	Family	Breast cancer type 2 susceptibility protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11289	BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08775	BRCA2, FANCD1; breast cancer 2 susceptibility protein	-	DNA repair and recombination proteins	ko03400	deepkoala