Gene detail

Detailed information of KXJ27147.1 in Exaiptasia diaphana

Genomic Location: LJWW01000023.1:195126...197705
NR annotation: KXJ27147.1, Zinc finger protein 420 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ27147.1

ATGTCCGAATCTGACACCCAGGGCTGGTKGGAGTACAGATGTAAAGGGGGAGATCTTCTGTTTTACTACAATAAAATAACAACAGARCACAGATTTCCAAAGTGGGACTTTGATTTACAGAAATGGAGCTTGGGAGCATCCATTGAAGGTGATGCTGTCAACACCCGTGTCACCACATCAACACAAACTGATGATACAGGGTGTAGGAATGGTTGCACATCAGTGTATGTAGATATTTTCCAGGGAACAGGGAGTGACAGTGAAAGTGGATCAAGTAGCACTGAGTTGTATAGTGCCAATGAAGGTGATTCAGATATCACTACTAGAGGCAGATCAACGAGAACGACACAAAGCACATCTACCTCTGAAAAAGATGTCAATCAATCCAACAGTTCCAAGTTGAAAAAGAAAACAACAAGAGAGAGTATCTGTCACTCSATCAAAGCAGACAAAAATTGTAGCCACAAGGAAATCTCTGCAGAAAAAGAAAAATTCCCAAAGTGTAGATTTTGTGGTAGAGCATTCACACATATAAGGGCTTGTAAAGTCCATGAAAAGAACCATGAACATGAAAAACGAKTTGATAACAGTTCTAMGAATCAAAGRAACCCAAMAACAGACRATGAATTACTTGTCAACAGCAAAGGTAAACATTCAAGTGTCCACACAAAGTTAGCAAAGAAAAAATCTCATAAGTGCAGACATTGTGGTCAAGCATTTACACATGTAAGTGCCTGCAGAATCCATGAGAAGGTTCATGTACAGGGCAGACTGGATGCTGGAAATGTTAGTTCCAATAGTGAAAACAACAGAAGCACAGACCRTCCATTACTTGACACTGCAAGTACCTCCTCTGACAGYCATGATAAAGATACACATTCTACTCACAGGGGTGCATTAATAAAAGAAAATTCTCACAATTGCAGACACTGTGGTAAAGCATTCATGCATGCTATTGCGTGTAAAATCCATGAAAAGACCCATTTAAACAAACCATTCAAGTGCAGATTTTGTACCAAAACGTGCAGATGTAAATGGGATGTTAACCACCATGAGTATCTTGTTCACTCAGACAAAATACCATTTCAGTGCAAGTTTTGTGACAAGAGATTCAAATGGAAACGGGACTGTGCAAGTCACATGCGCATTCACACTGGAGAGAAGCCATACCAGTGTAAATATTGCAGTAAGACATTCCGATTGAGCAGTCAATGTGCAACCCACATGCGTGTCCACACAGGAGAGAAGCCATACAAGTGTCAATATTGCTGCAAGACATTCAGAAGAAATGAACATTGCAAGTCGCATGAGCGTATTCATTCTGCTGAGAAACCATTCAAATGCAGGGATTGTAGCAAGACATTCAGACATAGAACTAGTTTAGAAAGACATCAATATTCACACTCTGCTGAAAAGCCATACAAATGTCAGCAATGTGTAAAGACATTTGTAACCACCAGGGAACTTAAGCAACATCATCGTGTTCATTCGGGAGAGAAGCCATTTAAATGCAAGCATTGCGACAAAGCATTTTCGTGTAACAGCCACTGCATTAGGCATGAGCGCATTCACTCAGAAGAAAGACCTTTTAAGTGCAAACACTGCGATAAAGCATTTAAATCGTCAAGAGAACTCAAAACACATGAGATTTCCATGCATTTAGGAGTAAAAGCATTTAAATGCAAATATTGCGACAAGGCATTTGCACTTAGTAGCAATCGTAGGCAACACGAACTCCTTCATTCAGGAGTGAAGMCATATAAGTGCAGTCATTGTAGCAAATCATTTGCAACACGAAATCATCGCAAATTGCATGARCGTGTGCATACAGGGGAGAAGCCATATCAATGCCAATATTGCAACAAAAAATTTAGCAATTCTTCTTGCTTAAGGAGACACGAGAACTGCCATACTAAACCATTTAAATGCAAGCTCTGTGGCCTGGCCTTTAATCGGTCCAGTCGGTTGAAAAAACATGAACAGACACATTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR022755	Domain	Zinc finger, double-stranded RNA binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24408	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala