Gene detail

Detailed information of KXJ27394.1 in Exaiptasia diaphana

Genomic Location: LJWW01000021.1:1527163...1533871
NR annotation: KXJ27394.1, Pre-mRNA-splicing factor cwc2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ27394.1

ATGGCGGTCGTCAATGAAAGTTTGAAAATTTGTACATATTTAGAAAATCTTCTAGAGGACACATTTGGGCCTTGTGGTCTTGATATAATGCTGAATTCGTCGTCAGGCAAGATACTGATTACAAATAGTTGTGGCGTTATTGTGAATTCTTTGTGTTTTGGTCATCCTKTGGCAAATGTTATTGTTGACAAGTTAAAGAGTCACAATGAAATCACTGGTGATGGCTGTTGTGCATTTATTTTGGTGCTTGCACAAGCTTTAAGAGGAATAGCTGATGTACTGCAAAGCAAGAGTCAAGCAGAKTTAACTACATCGTCGTTACAAACGATGTTATCATTATCAAAGCATTTTATGAAGATGCAAAGTGAGCTTGAATTCCTTGTCCGGCCAAAACTAGAGAAAATTTCGACTTCTGTTGATTTAAATTCAACAAGTCAAACTTCAGTAAACGAAGTATTATCGCACACCATTCATTCTTGCTTGAATGGGAAATTCTCTAAAAGTGTACAAAAGCTGCTATCAAAACWTCTGTTGGATTTGATTACAAAGACTTGTTCTCGTGATAATTTTTATGATGACATTATTAAGCTTATCGATGACTTGCCTCAATGGTGTATTCAGTTTCATGGTATGCCTTTTCTTAATTCACACATAGAGGAAGGGTTTGCAATACCAAGGGAACTCYCAACTGGTCAGGATGTCGCWTTACCAAAACCAGGAGAAACATCATTCACATTCATTTTATTACAGTGCTCCTTGGATTGCAGTAGAGATTTTGAAAAAGCGGAACTAGAGGTTGAAAGTCTGTCACTACACTCTAAAGCTCTATTACATAACCAAACGACATGTTTTTCTATATTAAAATCATTCAAGGAACAAGATATCCAACTTTTAATTTCTTCTGAGAGTGTTTCCGACATGGTTCTGCACTTGTGTCGTCAACTTGGAATAGCTGTCATTCAAATGGTTCCCATGGAAACCACTGATTATATCTGCAGGCTGGCAAATGTCCAGCCAATCTGCAGTGTCAACCAGAATGATATTCAAAGTATTTCTGATAACTATAAAGGAAAGGGTTGCAGCTGTTTAGAAAAGATCGTAGCTGGGCAAAAGCATGTTCAGTTGACGTGTGTTTCACCGCAGTCAACGCAAAGGATTTATCATATTGTTTTAAATGCTCCAACCCAAGGCCTACTACAACAGTACTGCATYGGTATTCAARSTGCTCTCAARTGCATTAAAATGTCATTCTCAGAGTCTCATAAAGAATTGACTTTGCTACCAGGATGTGGATCGGTAGAATTTGTCATTTCGCAAATATTTGATGAATTATGCCAAGCCACCACAACTGAACAAATGGCCACAGCCTTTGGTGTGCTTAGTAAAGCATTCCTACAAATACCAAGAGTGCTTCACAGGAATTCACATCAGTCTGGCGATTCTAATTATATGAGGGTTCAGGCAAAGATGTTAGCATCATGGAAGAGAGGCATTTTGTTAGGAGTAGATGAGAAGACAGGCGATGTTGTGGACCCTCATAGCATTCACATTTATGACCCTTATCAAGGGAAAATACTGTTGATCAGCCATGTGCTGCAATGCCTAGCAAAGTTGCTTAGAATAGATAAGATAATTGGTGTTAGTTGCCTGAGTGTTAAAACTATCCCCAGTCTCCCACAGTTTCAACAAAGGAAACCCAAACTTCATAGTAAAATCAACATGGCGGCCACCAAGAGAAGTCTTGAGGAAGAGAATACTCAAGCGAAAAAACCTTGTAGCGATTCATCTTCTATCGAAAATACACAACCCAGTGATGCTAATGAATATTATTCATCGTATTACCAAGTCTGCGAACACAGAGGCAATTGGATGTCACTTTACGATACTACTTCTGGATTTTTCTACTACCAAAACACAAAAAACTTACAAACTCAGTGGGAAAAGCCAGCAAATTGGGACAATTTACCGCCAGTATTTAATCCATGGATAAAAATGAAATCTTCTGTAAACAATCAAACGGTAAAACCACCCGAGCCTAAGGAGGAACCAGAATTTAAAAGTTTAACGAATAAAGAGTTCGAAGAAAAGCTTGATAAACTCATGAAACGACCTGCAAGAAGACAGGTCGATCCAGGAGARAAGAGCAGACAACATTGGATTCCCGAGGGATCTACAGAGTAYAATATATGGTATGATAAATGGGTTGGAGAGAACTGGCATCCAGATGACGGCCCTGCTGAAACTAGATGTTGTTTGGAAGACGATGCTGGATTCACCACAGCTAACATCATGGATCCAAAAAGCAGTAGACACCTTTTCTGTCTGTACTTTGCTAAAGGTTGCTGTCAYCTTGGAAAGGAGTGTAATTTTCTTCATTCTATTCCAACTGATAAAGACGAAAAAAGGATTGGTCTCACTGTTGATTGCTTTGGKCGTGAACGTCACCTAAACCACAAAGAAAACCTAGGWGGGGTGGGGTCCTTTGAGAAGGATTGTACAACACTTTATGTTGGTGGYCTTGGAAGTCGCAAAGCTGTTGAAAAAGAACTCTGGGAAGAGTTTGGAGAATGGGGAGAAATTGAGGACATCAGAGTTATAGCAAAGAAAAATATTGCTTTTGTAAGGTTCAAAAACAGACTGAATGCAGAGTTTGCAAAGATTGCAATGGGTGACCAACGGTTGGGTTGTAGGGATGTACTCAATGTCAGATGGGCAAATGATGACCCRAATCCCAGGGCTTACAAAAAGGATTTAGAAAATGCTAAAGAAAAGCTAGTCGAAGCAGCTCATGAGAAAGGAATTATCCAAGAACTAGAGTCCAGACCTCAACCAATAGAAAGTGGTGATGGAGTGACTGCACCTTACCCCAACACTAATAGTCAATATTCTAACCATGAATATTGGTCATGGTATTACAAGAATTTGGGCTACGACAGCCACAACAACTATCAACAACAACAACAACAACAACAACTTTATCAACAAGCACAACAAGCATATTCACAACAGCAACAGAAGTTTATATGCACAGCAGCAACAACAGCAACAGCGTTTATATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q54PH5	Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1
Q5BB35	Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1
Q6T412	Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF16131	Torus	Torus domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR042619	Family	Bardet-Biedl syndrome 10 protein	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR034181	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR032297	Domain	Torus domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan