Gene detail

Detailed information of KXJ28477.1 in Exaiptasia diaphana

Genomic Location: LJWW01000012.1:301880...310148
NR annotation: KXJ28477.1, Transcription factor IIIA [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ28477.1

ATGTCACATACTGGAGAGCGTCCATTTTTGTGTGATTACGAAGATTGTGGCAAGACTTTCATCAGAGAGTTTCATCTTAAGCGACACAAGATAAGTCACACTGGAGTCAAGTCTTTTKCATGCAAATATCCTGGGTGTTCTAAAACATTTTCAGTAAAACATAATCTTGTAAGGCATGAAAATAGAGCACATGATAAACCATTCAAGTGTAAGTTTGAGGGTTGCAGAGAATCATTTGCGAAAAATAGTCAATTRTGGAAACATGAATGTGCTCATGAAGACAAACTACCTTTTTTATGTGATGCCAAGGGATGTCAGAAGGGGTTCAAGACACAAGCACGATTAAACAGACACAAGAAGTCACATAATTTAGGATTCATTTGTTCTGCTGCAGATTGCAATGAAAGATTTGCAACATTTCATCAACTAAAACAACACATGATTTCACATGGTTTCAAATGTCCTTCTTGTCATTGGACCTTCGATTATAAATGGGAGCTGAGAAAGCATTTGGTAACTCACAATACAGAAAGAGAACTCTACAAATGTGAACACTGTGGCAAAATCTACACAAAGATGTATAACTTGAAAGTGCATATTGAAGTCAATCACAATTCTGTCAAGTCATATTGTTGCAGTTATGAAAATTGTGACAAAGTGTTTGCATACAGGAGATCACTGAACAGGCATTTGGAGAGTCACAAAAAGAAAGGAGGTTTCAAGGATCTTACAAAATTAGTCAGGTCTTATACCTGCCCTGTTGAAGAATGTGGAAARGCATTTGTACATCAGAGATCTATACATAGACATATCCAAAGTATACATCCAGAATTGAATTYAAAGGAAGAAGAGAAGAAAAAGAAAAAGTTGAAGAAGAAGAAGCACAAAAGGTCAAAACAAAGCAAAGAGCTTACAAAGAAAGAAACACTTAAATTACTTAATAATATCCGAGGTGGACCCTTGATTGCTAATACTTCAAGTAAAAACGATAATAGTAAAAATGCAGAAAGAGGAAATGATGGCAATAAGGGAAGTAAGGAACATGGCAAGAGCTGTGATGTTGATGGTCTCAACAAGAGCATTTCCACTGCTTCTGCTAATACTTCAAATTCATTTACTACTGCCAAACATGATAATCTAAGTAGCAGCACACATCAGAGTCATACTGCAGATAAGGGCATAGAGAGAAGTATGCAGCTCGAGGCCTGTGATGATGATKCTGAAAGTACTAATGATGACATTATAAATGTACATAGTGAAGATCAACATGTCAGTGACAATAGTATGCAAAATGATTCCAGTAGCGATGATGATGATGATGATGGCAGTGAAAATGCACATGAAACATATGATGATGATGATGACAATGATGAAAGTATGAGTCATGATTCCAGTGATGATAATGATAACAATGTATATAAAGAAATAACCGATGGAAGTATTGGTCATAATGTGTGCACTGATGATAGCCAAACTATACGACATGAWGCTAGTAGCAATATTGATAACCAAAATATTCATGATGAACAAAGCAGCGATGATGACAATAATGAGCCTAATATGTCTGATGACAGTGATAGGAGTATAAACCATAATACCATAGTCAAAGATGTTTATGGCAAAACTAATCACAATTCCTACACTAGTGACAATGACAAGTCTGTACATGCCAGTGACAATGATAACAGCAGGAATATCCAACAAAACACCTTGAATAATAAAGATATGCAGCATATCTRCGATGATGATAAAAACGAGAATAAAACATCATCTCAGGACGATTCTAAACAGATCCTTGTAGACGGAGAAAGGGACAACAGCAATGACAAAATTGAGACCCATAACGAGGAGGGTGCACAAGAAACTAATATTTTTCAAAATAACAACAGTTTACAACCCAGTAATGAAGACAAGTTCAGTAGAGATTTAAATAATGCTGCTTATCAAGAAGAACAGCTTGAAACAGGCAAAAATATTGAAATAATTACAAATGACAAAGGTGTTATGATAATGGTTATTGAAGAAGATGACTAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
O60315	Zinc finger E-box-binding homeobox 2 OS=Homo sapiens OX=9606 GN=ZEB2 PE=1 SV=1
Q9R0G7	Zinc finger E-box-binding homeobox 2 OS=Mus musculus OX=10090 GN=Zeb2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09191	GTF3A; general transcription factor IIIA	-	Transcription machinery	ko03021	deepkoala