Gene detail

Detailed information of KXJ29412.1 in Exaiptasia diaphana

Genomic Location: LJWW01000005.1:1438431...1447263
NR annotation: XP_020909660.1, putative RNA-binding protein EEED8.10 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ29412.1

ATGAATCTGGGCGCAAGCGGCAAGTCGTCTCATTCTCAGTTGCTTGAAGCGCTAAAAAGGATGAACTTTAATAGAGCTACGACTGGACTATTGTGTTTACAAGAGACTGTCGATCCCGGAGAGAATTCACACGACATTAACGGTGCGGAAAATACAAACCATCAAAAGGTTCCAACTGAATCTGACACAAYAGAGACACCTGCAAAGACAACCGACTCAACTTCTGCAAAGAACATTCATTCAAATTCCACCTCAAACGCTCYTACTCGGGAATCTYCGGGTAAATTAGATTTGGTAGGACAAGTTAAGAAAACAGTTGGACGAAATAAAGYRATTGCCAATAAGTGCAAAGTTTTCGTTGGAAATGTTGGTTTTAAAGTTAGAAGACGGGAATTTCGGGAATTCTTCGGTTATTTTGGTAAAGTGCTTAGTGCAGAGATCATTGAAGACAAAGCCAAGAGAAGATCACGAGGGTTTGGTTTTGTAACGTTTAGCAATGAATGGGAGGCACAGAAAGCAAAAGACTCTACAGACGATGAACGGATGTTGAATGGAAGAGTAATGACAGTATCAACTCCAACAAGGAGAAGAAAAGGTGGACGTGAACCTTTTGAGGAGGAGCAATCTTTAGAGGATGTCTTAGAAGAATTCAAACAGTTATCTTTAATGCAAGAGACAAAAGAAGAYGTCCATACTGAAAGTACAAGTAATAAAACTGAAAAAAGTGTACCCTCGTTTTCCAGCCTAAATGAWGATATCCTTATTCACATATTTACATTCTTGGGTCTAAAAGATAAAATACAAATAGAACGAGTGTGTAGAAAGTGGAAGTACCTTGTGCTCAAAGCCTGGCCTTCRGTGACTCACTTAGATTTCAAAGATATTTTTTCGCTGTATAAAGGAGGTCTCACAGATTATATTCTTCTGAAAATATTGCAACGTGGATGCAAAAATCTTCAATCTCTTGACTTATCTGCTTCACCTTTCCTGTTAACTGATTTTGCTGTCCACTGCATTGCTAAACATTGTAAAAGCTTGAAAAGAATAGACTTATCAGAAGTTAAAYTGACTACCTCTTCTTTAAAAGTCTTGTCTAAATCTTGCAATAAACTAGAGATTCTTATTCTAAGACGAAGTGGTGTTGGTGAAAAAGGATTTTGGTGGGTGTTTAAAGAATGTAGACATCTAAAATACATTGATGTATCAGATAACAAAAGATTGACAGGAAAGTGTTTCTTCATGCTGCCACCAACTGTTGAAACTCTTATTCTCAGTGATTGTAGCAGACTAACAGACAGTGGTGCTGCATTTATTGGTAATATATGTAATAACCTTAAGACAATTGACATGTCTGGATGTGCATCACTTACCAATGCTGCATTCACAGCCCTGCTGAACTGCACAAAGGTCGARACTTTCCGTTTCAAAAATTGCCCTCAAACAGTTAATGGTGAAGGACTAGAGATGATGATATCAAGATTCGCTAACTTGATGAAGTTGGATCTTTCTGGTTGTGACGCTGTGAATGATAAYTTACTTTTCCACATTGGGCGCTGCTCTACTAACCTAAATTCTCTTAATATTCAAGATTGTAGTATTGGTGATGTGAGTGATGCTGGACTACAGTCCCTTGTTACTTGTGAGAAGCTACAAGAACTTATCATAAGCTATAACGATCATATTACAAACGCAAGCATCAGTCAGTTGGCTTTGAATGGAACACTGCGAATATTCATTGCTAGGTCATGTGATGGAATGACGGATGGAGTTGTTGAAAGTCTTCTTACACGCTGTACAAACCTCGCCGAGCTGGATCTCAGCGGTTGTATATACATAACTGACGCATCGTTACTTCATGTGATTAACTACTACACGTCTCCAGTTGATAGGTGTTTGTTGACGTTAGTCATCGGAGGTACATCGATATCTGACGACCGAATAGATCAAGCYATAGAGGAATGTCAGGGGGTAAAAATCGTAACGCATGACTTTTCCACCGATCATCCCAAAGCCAGGAATCAGAGGATTGCTATGCCGCAATTTTTCCTGGATAGTGACGAGGAAGATGGCGATGACGATGACGACCAGTCACAAAACGAACATGACTTTGGCGCCGGCGATGAGTACGATGATTTTCTATTGGCTGATGACCCATCAATGATGGACGAACAAGAATGGATGTTTAATTAA

Transcript

Protein

Uniprot

Uniprot term	Description
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
Q95KI0	RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1
Q5NVN8	RNA binding protein fox-1 homolog 1 OS=Pongo abelii OX=9601 GN=RBFOX1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00646	F-box	F-box domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala