Gene detail

Detailed information of KXJ30020.1 in Exaiptasia diaphana

Genomic Location: LJWW01000002.1:2060206...2071355
NR annotation: KXJ30020.1, putative ATP-dependent RNA helicase DDX28 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

KXJ30020.1

ATGTTAAACATGAGATGCATAGCAAGACATATTAGAACGCACAGTGCGCAAGTCAAGAAAAAAACTGCTCAAAAACCCGCCAGAAAGGTTTTGCCAAGACAATTGGCTGCAACTTACAGTCGAGCAAGAAACGCGAAGAAAAATGCTGCTGTTGCACAGAAATTTCGCAAACACAAGGAAGAAAATAAACCAGCACTTGATTCATCGGCTTCCGTGTCGTCAGGACCAAGAGAGACAATCATTGAACCTTCAATGAAGAACCCAGCCTTTATCCCTGACGATAGCATCGACTTTAAGCAACGAGTGTCTTCATTTGGGGCCCTGGGACTACGTCAAGATGTTCTAAAGGCGTTGGACGGAATGAACGTCACTAAGCCAACTGTGATACAGATGGTTACTGTTCCGAAAATACTCCTGAGGAATCACGTATTGGCTGCTGCGCAGACAGGTTCAGGTAAAACAATAGCCTATCTTGCTCCGCTCGTCCATCATTTACGAGAAGAAGAAGAGAGACACGGCATTGTGGCAAGATTAAACAGACCTCGCGTATGCGTAGTTGTACCAGCGCGGGAACTTGCTGTGCAAGTCTTGAAAGTTGCCAAAGCTTTTAGTCACCATGCAAAGTTTAGATCAATGGGAGTCATAGGAGGACGCAAACAGAAATGGATTCGTAAGGACCTGGAGAACCCCGTTGATTTGGTGGTAGCAACTCCTGGAACCTTGCTGAAATACAGGCAAAAAGATCGATTGTTCTTTAGTGATTTGACGCATCTTGTCATAGACGAAGCCGACACCATGTTCGACAGCTCGTTTAAAAAACTTTCCATGGAAATACTGCACACAATCAATGTCCGTGAATCAAAGCCACCTTTACCAAATCAACTCCCCATCGATACACAAGTCACCATCGTCGGTGCAACGCTACCCGATGAACTTCTTGTCTCCACTCTGAACGAGATTGTCCCGAATATGACCAAGTGCACATCAGGACTCCACAGGGTACTGCCCCACGTGCGCCACATGTTTGTGAAGATAAATCAAAAAGACAAAGCAGAACGTTTAGTAGAGCTGTTGCAAAAAGACTCCCGACAGGGAGGACGCACGGTAGTTTTTTGTAACTCAGCGTCTTCCTGTGATTGGCTGGGGCATTACCTTGACAAAATGCACTTTTCATTTATACGTCTGCATGGGAATATTCCACCTGAGATACGCTGTCAACTGTTCGAAGACTTCCAGAAACGCGTCTCAGATATTTTAATTTGCACCGATGTCGCTTCCAGGGGACTGGATACTAGTGACGTAACACACGTGATTAATTTCGACTTTCCAACCTCTGTTGTCGACTACATCCATCGTGTTGGTCGGACTGGGCGTGTCAGTCACGTGATACCCAAGGTTACGTGTCGTGCTACCAGCTTTGTGACTCATAACCGTGATGCTCGCATGGCGAAAACTATCGAGGTTGCGGCCAAGAAAAAAGAAAGTTTAGACCTTGGCAAGTCAAGAGACCGTGCAAAAAAAGAAAAACTYCTTWCAGTTCAAAAAAGGAACAAAGACACCCAACAGATGTCCGAAATGGAAACTAACTGGATTAACTACAAGTGTAAATCAGGTCAGACTTTGTTTATCTACAACAAAGTGACTGGAGAACACAAGTGGCCTACTGGCGATGGTTCAATACTGGATGGAGGTGTCATTGAAGGTCAACCAATAGTATTAAAACAGACCTGCAGTACYAGTWCACAGACAGATGATAATGGCTGCAATAATGGTTGTACTTCCATGTACATCAATGCATCTTCTACAAATACCAACTCAAATACATCAACTCTAAACAAYCGTGAAGCCATGAGYGAAGTCACTGATAATTGTCAAGAAGAGCAGGAACAGAGTCTAGTTTTGAATGAAATATCAGCCATGTTGGCCTTATTAGAGGAGTTTGAGATGCCTCTTGGTAATGATCAAAATATYCCAGAAGATTCAGACTTCTCWATAGGGTACATCCCAAATAAGGACAAAGAACTACCRCAACAGGATCAAAGRCAGAGTGACGAGAAATTTGCATTTCTCAACAAGTGCTTTCTTTCTATGTATGATTATATATTTAGAGGATTTTGCCCAGTCCCCCACGGTTTGAAATCCGGCAATGGTATCGAGATTCCTGAGTCGGAGCCAGTGCGGATCTACTCGTTACATACGTGCATCACATGTCCAATCGCGAACCTTGTTGGAGTTTTAGCAAATTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q56X76	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2
Q4R4T6	Probable ATP-dependent RNA helicase DDX28 OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1
Q9NUL7	Probable ATP-dependent RNA helicase DDX28 OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20096	DDX28; ATP-dependent RNA helicase DDX28	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala