Detailed information of M_g19167.t1 in Bougainvillia cf. muscus

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Bougainvillia cf. muscus · all data for this species · gene families

 Sequence
No sequence record for M_g19167.t1 in BCFM (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11934
all species →		DUF3452Domain of unknown function (DUF3452)FamilyInterproscan
PF01857
all species →		RB_BRetinoblastoma-associated protein B domainDomainInterproscan
PF01858
all species →		RB_ARetinoblastoma-associated protein A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028309
all species →		FamilyRetinoblastoma protein familyInterproscan
IPR024599
all species →		DomainRetinoblastoma-associated protein, N-terminalInterproscan
IPR036915
all species →		Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR015030
all species →		DomainRetinoblastoma-associated protein, C-terminalInterproscan
IPR002720
all species →		DomainRetinoblastoma-associated protein, A-boxInterproscan
IPR002719
all species →		DomainRetinoblastoma-associated protein, B-boxInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13742
all species →		RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan
GO:0051726
all species →		Biological Processregulation of cell cycleInterproscan
GO:2000134
all species →		Biological Processnegative regulation of G1/S transition of mitotic cell cycleInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for M_g19167.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Bougainvillia cf. muscus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Bougainvillia cf. muscus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.not in the sequence tableopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.not in the sequence tableopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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