Gene detail

Detailed information of NY_Scal100_v1.156.1 in Scolanthus callimorphus

Genomic Location: chr1:13135981...13137732
NR annotation: no NCBI-NR hit recorded
Species abbreviation SCALL · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18564 all species →	Glyco_hydro_5_C	Glycoside hydrolase family 5 C-terminal domain	Domain	Interproscan
PF00150 all species →	Cellulase	Cellulase (glycosyl hydrolase family 5)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR041036 all species →	Domain	Glycoside hydrolase family 5, C-terminal domain	Interproscan
IPR001547 all species →	Domain	Glycoside hydrolase, family 5	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR052066 all species →	Family	Glycosphingolipid Hydrolyzing Enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31308 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05991	E3.2.1.123; endoglycosylceramidase	EC:3.2.1.123	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.