Gene detail

Detailed information of OS493_005576-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2652193...2658772
NR annotation: KAJ7365468.1, hypothetical protein OS493_005576 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_005576-T1

ATGGGTACGGCTCCCAAAGGCCCATCAGTTGACTGTTTAGCAAATTCTTCAAATTTACGAACTGAAAACGGCGATGTGGTGGCGGTAATGGAAAGCGATGATGAAGATGAAGACGCTATCAGGCCTGTTGGGAAGGCGACTTCACGTAGAAGGCAAGCTCTGTCGAGTCCGTGTTCCCAAGGGTTTAAAAGACCGGTTAATCCTGGAAAAGATGACCAGCGTCATGGCTTGTCGTCTCGTCATGTTCAGCTGGGGTCCGAGAGCGACGAGGAGTTTGAAACTGATAAATCAGCAGCTCGAGGCCGGTCCGAGTCAGTGAAGACCTCACAAGTCAAAGCAAGGGCTCAGAAGAGAAACTCTCTTGAAATAACCGCCAAACAGGGCACACGGAAGTCACTTGATTCTCACAGAAAGGGAAACAACAAAAGACTACGGACTAATCATTTCGTGGACGACGAAGCGGAGTTATCTGGCAGTGATATAAACAACTTCTCATCCGATGAAACAGATGACGGCGATGAGGAGGAAATGGACAGTTTCATTGACGACGCCACTCAACTAACACAAAGAACTCCTTCGGCGGCAAAACCGCGCCACGCCAGCTCTCCTGTGGACATGATGGCGGTTTATAGACAATCTCTGCAGAGTCCTCTCTGCGGCGCGTTGAATTTTAGAACGCCTGTGTTTCACAAGCAGAGAAATAAGTACAAAATGGTTTATAAGAACAGAAGCGTTGACGAAGATAGCCAATCCGAGTCTGAAGCCGAAGAAACTTACGAATCAGAGAGCGTTCTTGAAAACGAGGTGGAAATAGAGGACGAAAACGAGGCAGGGATTGAGCATGAAAGCGAGGCTGGTAGGCGTGGAAGCGAGGGTGCTCAAAGGAACGCTCACCACGCACGCGCAGACGTATCCTTCGAGGAGAGTCAAATTGGACGTCCAGTTAAACGCATGAAGAGAAAACGAATTTTGGACGATAGCTTTGACGGGGAAGTTTCACCCAAGTTAAGCAAACAGAGGAACTTGTCAGAAACTTGCAACAAGAAAAACGCTATTGAGAATAACACGATGGACCCAAAATGTAATGATGCACAATTGCGGGTAACCCAGCCACGGAAGGGTGATGCAGTTGGGAACGTTTCAACCAAATCCACGGTAGTCGGTGATACTTATCACGGTGACTTTGTCAAATCGTCTCAAGCTTTAGCCAATAAGAAGAATTGCCATGACAACTACTCAGCCTTGAGTCGGTCAGCGGTTAGCAAGGAGAGTATGCGCAGATCCGGAGCTTTCCATGATGAGTGGAACAACGATATTAGTGACAGTGAATTGCTGGTTGCTCTTGACGACAAAGGTGAACAGGCCTCTACTAACAAAACATCTGAAAAGAAACCACCATCAAGAAATCACGATCAAGACTTGGAAGACATCGCAGTTGCCATGGATATGACAGATAATGACGTCTCCATGGAAATCAGCGCGCTTCCAAATTTCTCACTCGGTTTTGATTTTCTATGGGAGGTGATTTCTACCAACCGTGAAACTGTGCGAGACAGGAACAATTCAAAAGACAACTCAGCCTCAACTTCGGAAAGAAGGAATGAAAACTGTAGTGTGAAACCAAGCTTAGCTATGGCGCAAGATAAGTTCGATAACAGTAGAAAGAGTACAACTGAGTTTTCAGATTTCACCAAGATAGCGCAGCATTCCAAACAAACCTCGGAGAGATCTTGTCAGCGACCGAGTGATCTGCAAACAGAGAACAAGGCCAGCGTTGCAGTGCGCTTGTCATGTACAGCCTCGAAATCGACAACAATTGCACCGCGGAAAGTCACAAACTCAAACATCTCCGCTGAAAGTTCGCTTGTTACCAATCAAAGCCTCGCTTCTAACAAGTCCCTGACGTTGCAGAATAAAAGTTCACCTCATAACGATGGTCAGCGTGCTGCCGACGTTGCGCATGCGAAGCTGCAAGTTGTTTCACCTTCGTGTCGTCCCAATAATCTCCGTACCAGGCCAGCGATTAGTCCGCTTCTCACGGTGGTGTCGTTATTGCGGCTGAAGCACAATATCAAGGCGGACGTGTGTCAGCTGACCAGTTGTGACTACATCGTCAGTAACAGAATGGCTGTGAAGAGGAAAACAGCTTCCGATGTTGCAAACGGCGCCAACAGTCACAAGCTTGTAGAGTGCATGCGCAGAATGTGTGATCTGTACGACAGACCGTGCCTGATCATTGAAAAGGATCGCGTCAAACCGGAGAAACGGAGAAGAACTTGTGAGTGTTACAAACTTCACTGA

Transcript

OS493_005576-T1

Protein

Uniprot

Uniprot term	Description
Q8IYD8	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2
Q8BGE5	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
A0A1D5PRR9	Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006166	Domain	ERCC4 domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan

Expression pattern

Expression trend for OS493_005576-T1 global co-expression network