Gene detail

Detailed information of OS493_005993-T1 in Lophelia pertusa

Genomic Location: scaffold_12:3305427...3334839
NR annotation: KAJ7339590.1, Golgi transport complex subunit 7 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_005993-T1

ATGATGCTTTCACTTCTAAAAGAACAAATGAATCTTGTGAAAGAGGACATCAGAGTGGTTGAAGAAAACACAGCACAGTCAATGAAGATGTTAATGGAAATTGACACAGTTAAAACAAGAATGCAAGATGCATCCACAGCTCTGAAGGAAGCAGATAACTGGACAGTGCTGTCATCTGATGTGGATAAAGTTTTTGAATCAGGGGATGTCAAGGCAATAGCAGCAAAGCTTGAAGGAATGCACAGGAGTTTAACTGTCTTACAAGATGTCCCAGATTATGCACAGAGGCGTAGACTCCTGGAAGGTCTGAAGAACAGGCTAGAAGCTCTCCTAAGTCCTAAGATTGTGGCTGCTTTTAATAATCACTCCCTTGATGACACCAGGGAATATGTTAAAATATTTACAAACATTGAAAGGCTGGATCAACTTCAGAATTATTACATCAGATGTCATAAGACAAAACTCCAGAAGACTTGGAATGAAGTTCGTGTTGAGGATCCAAATAAATCAATGCTGGAGTGGTTATCAACATTCTATGATGTCATCCTCTCAACCTGGCACACAGAGGTAACATGGTGTGGTCAAGTTTTTACTGACCCTGGAACTGTACTATGCACTCTAATCAGTCAAACATTGGCTCACTTGGACCCATCACTGTCGTCATGTATCACGGAGTTTATCAAGAATGAGCCAAACATCATAGGAAAATTGATTGAGCTGCGACAGGTAACTTTACGATTTGCTCATGGCTTGGAAAAAGCAGTTTCACAGCAACAAGACAAATGCAGTGCACATGCTGTCAACCTGTTGGTTGATGTATTATATTCACCTTACATTCCATACTTGTTGGATTACCCCGCACTACAACAGACATTCCTTGCAGAGCAGTTACAAGCAACACGGCTGCATGCACATGGCTTTATGGAGACTGCTGGGTTCATGGCTGAATCTGTTGAGAAAATATTTCACCTTGCTGACCAGGCAGTTGAATATTGTGTGGAGCTCACCGATGGTTATGCAGCCCGTGGTCTCTGCCATGTCTTGGAGGAGTTCTTTGGTGCCTATGCAGGACGGATGGATGAATGCATTTCAAGTTTAAGAAAAGAATGTTCCCTTGATGTGGATCCTAAAGTAGACACCACCCAACCACATGAAGAATTCAGTGAGGACTGGACGATGTTTCAGAATGCATTCCGTCTAATTCAGATTTGTGGTGATTTACTTATAAAGATGGAAAACCTGGATAAAACATTACTTGCTGCAATTGTCAGTTCTACAAAGGATTCTGACAGCCAAGAAAGTGATGTCATCAAAGAAAACACCTCTGCTCATTTGAGACCATTTCATTGGTACAATTATCTACAGAAAGAAAGGCCCATCGAGTTTAGTTCATTAAATGAATTAGTCCAGAAGCTTCAAACAGCTGGTGAATCTGCTGCTGTCCTCTCCAGTGTTGCTGAGCAGCTACAGGCCTTGAACGAGCGAGTGCACACGTTAGCTTTTGACATCGTGTTCATCCAAATAAGGCAACAGCTAGCTCAGACACCTAAATTACAGGTTTGGTCCGCTAAGAGTCCCGAGTCTGGGGCAGCATTAAGTGATGAACTTCCTACATTCAGCTTATCTCCGCTAGGATACATTACACATATTGGGGATTACCTTCTGACCCTTCCTCAACAACTTGAGCCATTTATAACGCAAGAAAATCCTGCACTGGAAGCTGCCATGAAAGCAGGAAACCTTCCTTTCCCGGATATACAAGATGAAGATGAGCACCACGCCGGGACCTACTGGCTGGGCTCCATCGCACGTGGTACCATGCACACTTACACAGAGAGTATCCTGAGGATTCACGAGCTCACTCCCTACTCTACTCAACAGCTATTGGCTGATATAGATTACTTCTGCAACGTGTTGGAAGCACTTGAAGTGACACCAAGTCAAACATTGACGCATATTAATGAGTTACTCAAAGCATCTGCTGACAAATTCCATGACGTAGCCACTGATCTTAGTGTGGAGGATCGAATCACCATGGCAATCTCTGGAATAAGAAGCATCCACTAA

Transcript

OS493_005993-T1

Protein

Uniprot

Uniprot term	Description
P83436	Conserved oligomeric Golgi complex subunit 7 OS=Homo sapiens OX=9606 GN=COG7 PE=1 SV=1
Q3T1G7	Conserved oligomeric Golgi complex subunit 7 OS=Rattus norvegicus OX=10116 GN=Cog7 PE=2 SV=1
Q3UM29	Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus OX=10090 GN=Cog7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10191	COG7	Golgi complex component 7 (COG7)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019335	Family	Conserved oligomeric Golgi complex subunit 7	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21443	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0017119	Cellular Component	Golgi transport complex	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20294	COG7; conserved oligomeric Golgi complex subunit 7	-	Membrane trafficking	ko04131	deepkoala

Expression pattern

Expression trend for OS493_005993-T1 global co-expression network