Gene detail

Detailed information of OS493_010364-T1 in Lophelia pertusa

Genomic Location: scaffold_25:1425023...1427228
NR annotation: KAJ7392711.1, hypothetical protein OS493_010364 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_010364-T1

ATGGTATGGATTCCTCAAGGTAAAGTTGATTCCCTGCTGGTCAATTTCTTCCTCAACAATTTATTGTCTGTGGTTTCTCTTCACGGAGATTCTGAGGATAGTAATCTTGAATGTGATAACTGTGAGAGTGGTGATCCTCCTGTCAACAGATGTGCCACGTGCTGCCACTTTCTCTGTGAGTTTTGCACTCAAGGTCATCGGCGAGGACGTGGCACTAGATCACATAATCTGATGTCACTTGAGGAAGCAAAACAGATGGGATCTGTCGCTGTAATGAAACCTTGTTTTTGTAAAGAACATCAAGGGGAATTGATAAAACTATTTTGCGAGACATGCGATGAAGTTATTTGTCGAGATTGCACAATTGTCAAGCATCGTGATCACAAATACACTTTTGTCAATGATGCTTTTTCGAAGGGCAAGGAAAGTGTGTTGAAAATTCTGTCAGAGACGAAGACAAAGGCGTCCACACTCAAAGAGGCATTGGATGGTGTTTCAGAAATGAAAAGAAATGTTCAATCTCATGCAGAACAGACTTTACGAGAAGTCATCACCTGTTTTCAAGAACTCACAACTCATCTGAATACTCGTTGTGAAGAGTTGATTCATGACATAGAAGAACTTAGGAAATCTAAACTGAAGTCATTGGAAATCCAGCAAGGAGAATTGGAAACAGCGCTAGGAAGTGTGGAAAGCAGTGTAGAATTCACAGAAAGGGCTTTGGAAAATGGCAGTGAAGTTGAGATTTTGAACATGCACAAGCAAATGTCCTGCCGATTACAAGAACTGAATTCAGCTGAGTGGAAGCTGGAACCATGTGCTGACGATGCCATGAAGTTCAAAGCTCAAGACAAGCAATTGAAACAAGAAGTTGCAACCTTTGGTGTCATTACTGATGTGGCGACGCATGCTGGTACATCGACAGTAACCATGGGGCATGGATCGGAAGGTGTGATGTACAATACACTGTGTGGGCAGTCTGTTGAATTCACCATAATCGCCAAGGAACGTAATGGAAGGAAACGGATACAAGGTGGAGATATTTTTGAAGTAGAAATATGTACCGAAGCTGGTGAAATAGTATTTAATGATTCAAGTAAGGACTGTGGAAATGGAACACATAGTTTCCATTTTACTCCAAACCAATTAGATATGCTGTACCAGTTGTCGGTGGAATTGAATGGTTGTCATGTGAATGGAAGTCCTTTTACTTGGTTTAATGAAATTTGGAATCTCTGCTCAGAGGTCCGTGATGTACGTGGTGCAAATACTAGCTACATTCAGCTGACCACAGATTGCATGAAAGATTGCATAACAGCAAAATATTGCTGGCAGCAGCAACCATCTTATCCCAATTACGGTGACGTTGTTGGGCTGCAACACTCTGGCCGGCATCAGCAACAATCTTATCGCCATTATGGTAACCGTAACATTGTTTGGCGGCAACGCTCTGACTCGCATCAGCAACAATCTTCTAATCCCCATTATGGTAACCGTAACATTGTTTGGCGGCAACGCTCTGACTCGCATCAGCAACAATCTTTATATCCACATTATGGTACCCGTAACATTGTTGGGCGGGGCTGGCATCAGCAACAATCTTATCTCCATTATGGTAACGTTGTGCAGCAACTCTCTGGTGGCAGATCCAGAATATCAGGCAATGTCTCAGCAGAATTTGCTTTTGGTGTTGGTGTAAGTCCCGAAACACGATGCCCTTGTGAATCCCAGTGGACATGGAAGTCTGGACACAAATGTCAGCCTTCATCACAACCACAGCAGAGTACATTTACTAACTGTATGAACAATGACATCATTGAGTTTTACCTGGACTGTGATAACAAGACTTTAATGATGTACAATCAACGTTCCAAAGAGTTTGACACATGGGAGGGACTCCAAGGAGAAGTGCGTCCCATGTTTGAAATGTACCGTGTTGGAGATGCGCTGTCCTTGCCTTGCCTGCTGATGCTAGAGGTTAACAAGAATGAACCTGAGAGGGAAGAGGATGCCAATGTTGATTATGAGTACGAAGAAGATGTGTGGTAA

Transcript

OS493_010364-T1

Protein

Uniprot

Uniprot term	Description
O15164	Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
Q9UPN9	E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens OX=9606 GN=TRIM33 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan

Expression pattern

Expression trend for OS493_010364-T1 global co-expression network