Detailed information of OS493_011589-T1 in Lophelia pertusa

Genomic Location: scaffold_29:2798302...2804552
NR annotation: KAJ7363304.1, TRP-like ion channel Pkd2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A2A259Polycystin-2-like protein 1 OS=Mus musculus OX=10090 GN=Pkd2l1 PE=1 SV=1
Q4GZT3Polycystin-2 OS=Bos taurus OX=9913 GN=PKD2 PE=2 SV=1
Q9P0L9Polycystin-2-like protein 1 OS=Homo sapiens OX=9606 GN=PKD2L1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13202EF-hand_5EF handDomainInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR003915FamilyPolycystic kidney disease type 2 proteinInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR051223FamilyPolycystinInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0050982Biological Processdetection of mechanical stimulusInterproscan

Expression pattern
 Expression trend for OS493_011589-T1 global co-expression network
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