Detailed information of OS493_016599-T1 in Lophelia pertusa

Genomic Location: scaffold_51:869745...891042
NR annotation: KAJ7379363.1, Scm-like with four mbt domains [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9JMD2Scm-like with four MBT domains protein 1 OS=Rattus norvegicus OX=10116 GN=Sfmbt1 PE=1 SV=2
Q9UHJ3Scm-like with four MBT domains protein 1 OS=Homo sapiens OX=9606 GN=SFMBT1 PE=1 SV=2
Q5VUG0Scm-like with four MBT domains protein 2 OS=Homo sapiens OX=9606 GN=SFMBT2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF02820MBTmbt repeatDomainInterproscan
PF12140SLEDSLED domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004092RepeatMbt repeatInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR050548FamilyPolycomb group and chromatin remodeling factorsInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR038348Homologous_superfamilySLED domain superfamilyInterproscan
IPR021987DomainSLED domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12247POLYCOMB GROUP PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26269SFMBT; scm-like with four MBT domains protein-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_016599-T1 global co-expression network
TOP