Gene detail

Detailed information of OS493_017616-T1 in Lophelia pertusa

Genomic Location: scaffold_57:151346...159812
NR annotation: KAJ7379118.1, hypothetical protein OS493_017616 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A4IIM2	CUGBP Elav-like family member 2 OS=Xenopus tropicalis OX=8364 GN=celf2 PE=2 SV=1
O57406	CUGBP Elav-like family member 1-A OS=Xenopus laevis OX=8355 GN=cugbp1-a PE=1 SV=1
Q6PF35	CUGBP Elav-like family member 1-B OS=Xenopus laevis OX=8355 GN=cugbp1-b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13207	CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor	-	Spliceosome	ko03041	deepkoala

Expression pattern