Gene detail

Detailed information of OS493_017752-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1504145...1517880
NR annotation: KAJ7379243.1, hypothetical protein OS493_017752 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_017752-T1

ATGTCGTTGGATGTAACAGCTTGCTTGAAGGCGCTCTCGGCCGCATTTTGTCAGTACAGAAGTCACACGACTGATCAAAACACCAAGGATCTCGAACGACAAATTGACGTTTTAATTGGTATCACCTCATCCGGGAAACCTTTGCGTGGATTTAATGCCAAAGAGCTTCTTCCTGCAGAATGTCTTTCTTCTCTAGTGGGTCTGTTGAGTGAGAGTAATGTAAAACCAAGTCTTCATACCAAGGCTATGGTCCTACTCTTTAATCTTGCAAATGTTAGAGAGACAAGAGAGATTCTTCACACCACTTATCACCTGGCATCCACACTAGCAGCCTTACTTCATAGGCATCATCTTGCATCAAATGAAAAAATGATTTTACAGTGCCTGCAACTTCTAGAAAGGGTAACTTATGGTTGTAAGATTACTACACCAAGTGGATACATTGAAGAACTGATCAGATATCTGGTGACAAACACACAGATGCCAGAATCAGATCTAACTATTCCCTGTCTAGGCCTGTTGGCAAATCTGTGTCGACATAATCTGCCAATCCAGGCTCACGTCAAGGCACTGGAGAACATTAAATCACTTTATCGGACTCTGATAGCCTTTCTCTCTCACAGTAACCTGACAGTCATTGTTTTTGCATTGTCCATTTTGACAAGCCTGTCACTTCACGAGCAGCTGGGGGAGAAGCTGTTCAATTCTAAGAACATCCACCAGACTTTTCAACTTGTGTTCACTTTTCTAATAAATGGTGAAGGTCCAATGACAAGGCGCTCTTCTGTGGATCTGTTTGTTGACTTACTTGCCAGCCCCAAGATTCAGCAGTCCCTTCTCATACATGAACATTTAGCTTTTTATTTGGAACAGATTTTGGCATTGCTTCACTTAAATCAGGCTGAGGAAGCCGCTAAGGTATTTGAGCTGCTGTTGACATTCTGTTCAGTGACTGGGTTACGGAGTCTTGTGTGCAGAGCACTGTTCTCACCTGCAAGCTCCAAACCCAAGGACCCAAATGTGAACAGTGCATATAATGTTGTCTTATACTGGGCCAGTCAGTCAGTTGACACCCACTCAACTGTGTCCCTAAAGGCTCTTGATTTCATCAAGGAGATTTATGAGGAACTTGTTGATGGTGGTCTTCTGGATCAGTTATCTCCTCGCACATCCGACCTGGTCCCTGTACTGACACAGCTGCTCATACCACCAACAGAAATTGATGGTGCCATTCTCAAACAAAAGTGTGCACAAGTCAACAAGGCCTTGGAAGTTCTAAGTGATATCCTTGGCATTGTGTTAGGAAATTTAAAGCTTGATTACTGGTGGAAGCTGCTGGAATATCAGTACCAACACAACAGTGTAGGAACAAGAAGTACTCTAGCACTATCTTGGAGTCTAGAGGGTGTCAGCGTTGTGCTTCAGATGTTAGACTTGCTGTGCAAGTTGAAGAACGATGTGAAAGGTTTAAAGGACCAGCTTGCTTCTGCGTTACAAGACCAGCGGTTGGTCCCATTCTTGGCACGCTCGTTGAGTAGTGATTCACGGAACAGCGTCCAAAAAGCTCTCCGCATTCTATGTGAGGCGAACAGTCTACCAGACTTCCAGGGTATATGGTTAGGTGATTTAATCGCCTCAAATAACGCAGCTCGCGAGGAAGAGATGACGCTGTTAAGAAGACCCACCGAAACAGAACTGAGTCCACCATCATCACCTCGTCACCATGTCTCTATAACCAACGGCCGGAACTCCTCCAGTTTACGCTCTGTAGGCCTGGACTACATTCCTGTTAAGATTACAGCTCCTGTAAAGAATGCACACCACGATTCAAACATCGAGTCCTTAATCGAGAAGATGAAGTCTGGATTAGAGATTAAGCCAGATCCTCACGCGTCAGAAATCATGGACATTTACGAGGCTAAAATGGCGGCTTTGGTGACGAAGGAAAGCCATCTTCAAGATCTGTTAGAAGCGAAAGCTCTTGCGCTGGCTCAAGCAGATCGTCTTATTTCACAATACAGGTGTCGGAGGGCCCAATCGGAAGCCGAGTGTGCTAAACTGATGCAGCTCTTGCAGACTACAGAAAAGAAAGCAGAGCAACAGGCAGAACAGATAAATGAACTGCTTCAAGCGCAAAAGGCGGCAACAAAAGAGATGGAAGTCATGATGAGACATAATGAAAACCTGCAAGCTGTTGCTGAAGAGCACGAGCAACTCAAGATTGGATTTGCTGAGCAGTCACAAAGACTTGAAACAAGCCAGCGTAGTCTTATGGCGGCTCAAGACGAGCACAAAGCGCTGTCAGACTTGAACGAGATGTTAAGGCGACACAACGATAATCTGAAGAGTCAACACGACTGCACATCTAAACAGCTCCAAGAACTCGAGCAGGAAAGAAAAAAGGTGGTACAACAGCTCAAAGAAAAGGACGCCAAATATCAGGAGCTCCGTAAAGCCCTTCAGAAACAAGAAGAAGAAACAAAGCAATGCGAAAAGAATATCAACGATCTACAAGAGAAAAACGAATCTTTGAAAAATGACTTGACAAAAGCAGAGAAAGAACGAAAGGAATTGTCCCATAAGCTCTCGTCGTTGGAGCTTATCTGCCGACAGAACGAAGACGTGATAAAGAAGCGAGAGGTAGCGATCAAGGAGTTACAGTCCGAGCTGGATCGCCAGTCGCAGATCGCCGCCATGATCCATAACCTCAGCAGCGGCAAAGTACCAATCAACAGCTACGGCGGCAGCTCCAGCTGA

Transcript

OS493_017752-T1

Protein

Uniprot

Uniprot term	Description
Q5XK92	Protein CIP2A homolog L OS=Xenopus laevis OX=8355 GN=cip2a.L PE=2 SV=1
Q5ZMJ7	Protein CIP2A homolog OS=Gallus gallus OX=9031 GN=CIP2A PE=2 SV=2
Q8BWY9	Protein CIP2A OS=Mus musculus OX=10090 GN=Cip2a PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21044	CIP2A_N	CIP2A, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR048701	Domain	CIP2A, N-terminal	Interproscan
IPR042510	Family	Protein CIP2A	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225	Repeat	Armadillo	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23161	PROTEIN CIP2A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

Expression pattern

Expression trend for OS493_017752-T1 global co-expression network