Gene detail

Detailed information of OS493_018397-T1 in Lophelia pertusa

Genomic Location: scaffold_61:266602...279164
NR annotation: KAJ7391354.1, hypothetical protein OS493_018397 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P13944	Collagen alpha-1(XII) chain OS=Gallus gallus OX=9031 GN=COL12A1 PE=1 SV=3
O42401	Matrilin-3 OS=Gallus gallus OX=9031 GN=MATN3 PE=2 SV=1
Q99715	Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12381	ARSG; arylsulfatase G	EC:3.1.6.-	Lysosome	ko04142	deepkoala

Expression pattern