Detailed information of OS493_020641-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1535992...1547368
NR annotation: KAJ7372207.1, TFIIH basal transcription factor complex helicase XPB subunit [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7ZVV1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Danio rerio OX=7955 GN=ercc3 PE=2 SV=1
Q1RMT1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Bos taurus OX=9913 GN=ERCC3 PE=2 SV=1
Q4G005General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Rattus norvegicus OX=10116 GN=Ercc3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13625Helicase_C_3Helicase conserved C-terminal domainDomainInterproscan
PF04851ResIIIType III restriction enzyme, res subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050615FamilyATP-dependent DNA HelicaseInterproscan
IPR032830DomainHelicase XPB/Ssl2, N-terminal domainInterproscan
IPR006935DomainHelicase/UvrB, N-terminalInterproscan
IPR001161FamilyHelicase XPB/Ssl2Interproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11274RAD25/XP-B DNA REPAIR HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000112Cellular Componentnucleotide-excision repair factor 3 complexInterproscan
GO:0005675Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0097550Cellular Componenttranscription preinitiation complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan

Expression pattern
 Expression trend for OS493_020641-T1 global co-expression network
TOP