Gene detail

Detailed information of OS493_021507-T1 in Lophelia pertusa

Genomic Location: scaffold_83:207887...239366
NR annotation: KAJ7358732.1, hypothetical protein OS493_021507 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_021507-T1

ATGGCAGCTCCATTACCTCCAGTTGTACTTAGTTTTACAAGTAAGAACATTACCAAGTCAAGTACTGGAATTCATCTGTGGCCTGTAGAACAAAGGAATGGACCAATAAGCAATTATCAAGTTATAGTTTTGAAAGTTGCCGATGGTGCTTATGAGCTTCCAGGTGGTTATGCTTCAAAACTGAAAGATTCGAATAACGCCAACAAAGACAACTTGCCCTTTTACGTTGCTGCTGAGATAACAAATGTTCCAGTTCACGAGGAATCTTGGGAATTTACTGTTGGTGACAAGGAAACATATGGAACTTATATAAATAAAGGACTTGAAGTAGGAGAAGTCTACTTCATTTACCAAAGAGCTGTGACCAATGACAACGGTCACATTTTAGAAGGAGAAGTCAGCAAAGTTGCCACAATTGCTGTTGTCATTCAAGATGTTGGAGCAACGGACACATCCGAGGGTTCTGTTAGTCCTGCGGCGTATGTTGTGCCTGTGGTCCTGTTACTTCTTATTGTACCAGCTCTTATTATTGCAGTGTTTTTGTATCGGAGGAGGAAGCGACCAGGAAAAGAAAACGACAACAGTGGCAGGACTACTCCTGTTGAACTTGATAACATCACAAGTGATGTTGCAAGCACATCAAATCTGGTTTATCAAAATGTGGCTGATATTCGACCACCTGAAAAAAATGTTGTGGAAGCATCTCCCCCAGAGGAAAAAGAATTGGTCTATAGTGAGGCAGAAGATGGTAAACCAAAACCAATTCCTGTGGCTGAGTTTACGAAATACTTCAAGAACAAGTCAAGTAATGGAGCAATTGTGCTAAAAGAGGAATTTAAGAATTTACTAGGAGCTATGCAGTTCTCCTGGGAAGTTGGCAAGAACAACAGAATTAAAAACCGTTATGGAAACATAACTTCCTATGACCATTCTCGTGTTTTGTTGGAGAAGATAGATGGTGACCCAAAGTCTGACTACATCAATGCTAGTTACATGCCGACATACGACGAGGAAACTATGTGTTACATCGCCACTCAAGGTCCAACATCTGTGACCATCAGTGATTTCTGGCGAATGATGTGGCAAGAGAACTGTCTTACTATTGTCATGCTAACCAACCTGGTTGAGCTGGGAAAGGCCAAGTGTGACCAGTATTGGCCGGACACTACTACCAAGTTTGGTTCTATCACAGTCACTTTACTCAAGACTGAAACCGTTGCTGATTATGTTATTCGAAAGTTTGCATTAGTGAAGAACTCGGAGAAACGTGAGGTGCATCAATATCATTACGTCACTTGGCCGGACAAAGGTGTTCCACAGCATTCTGGAGCTCTACTGGGATTTAGATGGAAGATTCATGCTAGGCACCAGGCTACTGGTGGTCCACTTGTTGTGCACTGCAGTGCTGGTGTTGGACGAACTGGTACATACATTGCTATTGACGCCATGTTGGAAAGTGCGAAAGAGACAAAGACCGTGTTCATTCAGAATTATGTGCAAGTGATGCGGAAATTTCGCCCTCACATGGTGCAGAAGGAGGACCAGTATGTATTTTTGCATCAAGCAGTGATGGAAGCTTTGACTTGTGGAAATACAGAGATTCCTCCTCAGGACTTACGGATTACAATGAACAAACTTTCCAGAGTTCATAAACCTACCAAAAGAACCGGATATGCACGAGAGTTTAAGCGTCTGCAACTCGTCAGTGAATGCCAATCCTCCGAGGAATCGACTGCAGCATTTGAACCTTCAAATATCAACAAGAACAGATTTCCTAATATTGTACCATTGGATACTGCTCGAGTGTTCCTGAGGTCTTCTGATCCCGAAAAGGACTACATCAACGCCTCTTTTGTCGACGATTACAGAGAACGTAACGCGTATATCCTGACTCAAGCCCCATTAGATAACACAATTGGAGACTTCTGGCGTATGATATCACAGTATGATGTTGGCACAGTTGTGATGTTGAACAGCTTGAAGGAGGGCAACAAGAGTTACCCACAATACTGGCCAACTGAAGGATCTGTCAAGTATGGTGACGTCACTGTTCAGATTCTGTCGGAAAAACACTTCAAACAACATCACGACCAGGAGATGTAG

Transcript

OS493_021507-T1

Protein

Uniprot

Uniprot term	Description
Q15262	Receptor-type tyrosine-protein phosphatase kappa OS=Homo sapiens OX=9606 GN=PTPRK PE=1 SV=2
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q99M80	Receptor-type tyrosine-protein phosphatase T OS=Mus musculus OX=10090 GN=Ptprt PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06777	PTPRD; receptor-type tyrosine-protein phosphatase delta	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Expression pattern

Expression trend for OS493_021507-T1 global co-expression network