Detailed information of OS493_023913-T1 in Lophelia pertusa

Genomic Location: scaffold_108:643971...677199
NR annotation: KAJ7328643.1, Regulator of nonsense transcripts upf2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A2AT37Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1
Q9HAU5Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1
F4IUX6Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02854MIF4GMIF4G domainRepeatInterproscan
PF04050Upf2Up-frameshift suppressor 2 RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR003890DomainMIF4G-like, type 3Interproscan
IPR039762FamilyNonsense-mediated mRNA decay protein Nmd2/UPF2Interproscan
IPR007193DomainUp-frameshift suppressor 2, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0035145Cellular Componentexon-exon junction complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14327UPF2, RENT2; regulator of nonsense transcripts 2-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_023913-T1 global co-expression network
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