Gene detail

Detailed information of OS493_025079-T1 in Lophelia pertusa

Genomic Location: scaffold_120:678621...695073
NR annotation: KAJ7328202.1, Ribonucleoprotein PTB-binding 2 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_025079-T1

ATGAACGGGGCGATTAAGTTAGAGAACAACGCCGAATTAGGGACTGTATTAAACGTCAATCCAAAGGAGGAATTTGGAAAAAGACGATGGGTTTTGATCACCAATATACCCGATGGAGTAAACGTGGAGGATATGAAAGGAAATTTCCTTCATGGCTACGATGTTATAGACATCAGAGTTGAAAAGAATTCAGCTTATGTTCTTCTTGGAAGTCCTGACCAGGCTATAAATGCTATTAACACGCTCAATGGACAGAGTTATCATGGCTATGTTGTCGGCGTATCCCTTGCTCCACCGGAGGGCTTCTTGTTTGTTGGCAATTTGCCGTTTGAATTCACTGAGGAGCAGTTCAGAGACTTAATGAGCCCTTTTGGACCAATCGAGAGAATATTTCTAGTGCGGAGTGTGTTTACTGGAGAGAGTAAAGGATATGGGTTTGTGGACTACATCAACCGCGAGTCTGCTGGTTCAGCCAAACAGCAGTTGATGAGTACAGACTGCCTCGGGATTTCACTGACGGTGAAGTGTTTGAAAGGATTATTCAGTCAGAGTGGGACAGTTACCTTTGCACAGGTTGCCTTGAACTCCCAAACTGGTATATCTCGGGGATTTGCTTTTGTCGATTATGTGACGGCAGAAGAAACAGAAAGAGGACAAAAGGCACACAATGGGGCACTGTTGGACGGCACCAATATCCGCGTGGCTTATGGGACTCCAGGGAGAACAGGGGCGAGCATACTAAGAGGCCAACATAACCCTAGTGTGGGAGTTCAGTCACCATTTGGCCCTCGTCCCAGGGGTCCTTCCCCTCACGTACAGTCTCAAGGTGCAGAGATGATCAGTGCACAAGGGCCACGCCCTCTCATGGCTCCGCGTCCTCTTATGGGATCAGAGCCTTGGCAACAAATGTCACGAGGCTATCCAGGGAGACCGCCAAGACCACTGATGAGGCCTGGTCTACCAGGTGCAAGGTTCATGTCGGTTAGACTCCGAGGGGCCTCTCCAGGTCCAGGGGGTGCAAGAGGTGCTCTTTTTGGCCATGGACCCAGGCCCCTTCTTGGCAGGCCCCCAGGAGCAAGGCCCATGATGAGGTATCCAGCAGGACCCAGGGGCTTTGCTTGTATGGGTGTAGGAGGCCCACCAGGTGTGAGACCCATGCTACCTAGAGGAGGGGCTATGCAACCACGACCTTTAATGGATTTTGGAGAGCAGCTTGATGGGACAGCATTCCCTCCTGAACAGATGCAGGCTGGTCCAGTAGGTATTGACCCCTCCCTGTCCCAGCAGCAACATATGAATGACACCATACCTACTCTTATGGGTGAACCAATGGTAGGAGGTGGATATCCCCCTTCTGCCGACCCAGGAGTGTTTGGTCAAACAACAGTTCAATCCATTGTGCAACAGCAGGAGATGTTAGTCCCTGCTCCAGCTCAGCAACAAGGAATGCTGCCAGGTCCATCTCACCCTCAGGGGCCAAGAGCTGCTGCAGTACCTCAATTGATGCAAGTTCAGACAGCTGGTGCGCCCATTGCCGCATATCCCGGCACCTTGCCTGCTCAGACACAGGTGGCTGTAATACCACAGGTCCCCCAGCCACTCATGGTACCTAACCAGCAAATCCCCAACAGTTCGTTGATGTACGCCACTGCCCCCACCAATGCCATGCCTGCGCAAGCTGTAGTCTCGCAGGTAGTGCAACCTGAACCAGCTCCACTCATGTCAGCACCAGCTACTCACAGTGTTGCTCCTGGAGCTGCTGTAGCCGGCCAAACTGATCTTAATACAGGGCACTATGGCATGCATGGAATGCAACAGATGGTACATGCTCAAGGTGACCCAGTTGGTAATACAGCAGTGAGTTCTGGGTATGTTGTACTCCAAGCAGACTCAACGCAACAAACTGCATTTTATGCACCACATGACTCGCAGTCTTACTCGCTGTCTCAATATACCACAGCAGGTCAGACACCTGGACATCAGCAGCAGCCTATGGTTCAGTTACCGGTGGGTGCAGTGCAGCCAGGCGGTGCTGTCATTCAGACCCAGGTGCCGTCATCTCAACCCACCCCTGTACCCCTGATGGCCCCTCAGATGCCGCAGTACCAGTGGTATCAGCAGGCCCCATCTGCTGTTAGTGGTGTAGCAGGGTCCACTTCACTCGCTCAAAACACACCTTTGCAAGTGACATCTTTAGGAGGAACCCAGTGGCCTCAGACTGAACAACTGTCCACTCAACCTTTGATGACTGTCCCGACCAGTGCGATGTATGGACACTACCAACAACAAACTCAACAGTACCAGCCACCACAAGCTGTGGCACCCAGCACCGCCGCAGAAAATGTAGTCTACTACCAACAAGCTCAGGTTCAAGTACCAGGTGCTCACCCACAACTCAGTCAAAAGAGACCCGCAGAAGGAGACACTGGACTGTACAGTCTGCAGGGACCTCCCAGTTACTATGACAACAGCAAACGACTGAGATATTGA

Transcript

OS493_025079-T1

Protein

Uniprot

Uniprot term	Description
Q5XI28	Ribonucleoprotein PTB-binding 1 OS=Rattus norvegicus OX=10116 GN=Raver1 PE=1 SV=1
Q8IY67	Ribonucleoprotein PTB-binding 1 OS=Homo sapiens OX=9606 GN=RAVER1 PE=1 SV=1
Q9CW46	Ribonucleoprotein PTB-binding 1 OS=Mus musculus OX=10090 GN=Raver1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala

Expression pattern

Expression trend for OS493_025079-T1 global co-expression network