Gene detail

Detailed information of OS493_025999-T1 in Lophelia pertusa

Genomic Location: scaffold_131:680593...690102
NR annotation: KAJ7356245.1, piRNA metabolic process [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_025999-T1

ATGGCTGACAAGAGCACTTTTGTTGGTGCCAGATTACGGGTCTCTACAAGCGAAGGAGATTACGAAGGAATGGTCCACAGCATAGATACAGAAAAAAGAAAGCTTACATTAACTAAAGTGGTTTCATGCAGTACAGGAGCAAAGCTTCATGGTTTTCACCACTTTTTTGGTCACGAGCTGAATACCTTGGAGTTATTGGAAGAGGCAAATAACAACAGTTCACACAATCAACAAACAGAGAATAAGAAAATTAGTGATAGTAAGGAAGATAAAAGAAAACACCAGCAAAACCATGACACTTCAAAGCCTGACACTGGATTTGGTGGTAGAGGAATAGCAAAAGCATTTAAAGATGCTGGTATAGGAATCAATTCCAAGCTGGGAGTCAAAAGGACGGCTGTTTCTAGTGGATCATTATCAAGAGATGCGAGCGACGAAGGCAACAGTTTACTGAAGAGGCAACCCATCATAGCAGAGAAGTATCTTTCTGATATGCTATCAGACGACGATGAAAAGGAGAATGTCAGTCCCGATGATCTGCCTGCTATTGTACTTATTGATGCTTTTGGAGAGTCCTTTGAGGAAGCAGTGAAGTTCATCAGCAGACAGAGAGTAATTGGTGTGTGCTGCGAAGGTGTCAACCTTGGTAGACTCGGAAAACTTTGTTGGCTTGTAATTGGTTGTAGTAAGGTTATTTACTTGTTTGATGTTCTCACTCTCGGAGCTCCCTGTTTTGATGAAGGATTACAAGATATTATGGAAAGTGGAGATATATTGAAGGTATTCCATGACTGCAGGCAGGCCAGTGATGCGTTGTTCCACCAATATCGCATCCGACTCGTGAATGTCTTTGATACTCAGGTAGCAGATGTTATTATTTATAAGAATGAAAGAGGAGGAGAGTTACCCAGGCATGTGAATGGTCTAGTGGCTTGTTTGTATGAATACTTGAATTTGTCACCAGAGAACGTCAACTTCCAGAAAGTGCGGCAAAAATTTATGCAGAGAAGTGAGTCCATCTGGGCAGACAGACCTGCTCCAGCAGCTCTTGTCGATGCTGCTGCTAAGCATGTGATGTACCTTCGGGAACTGCGCCTCGCTCAGATGGAGCGCCTCATGGCGGAATTTCTTTATGGAGTTGATGTTTACTTGAGCCTCATCAGAGATTCCAAGGAACTGAACCCCAAGGTGAAAGGCCAGCTACTTCCTGTTAAATTCAGAGAATTGAACCGGTATAATTACCGACAGCGTTCAAGGCGATTTGACGGAGACTTCCATGAGGACGCAAAGGAAGGAGTGCCAGAGGACGTGCTCGCCAGCCGAGAGGCCTGGTACGAGGGGGATCAGTTCGCGCATGAGTATCAGAAAAAGAAGGGGCGTGTCAAGGAAAGACAATTTGAGCTTCCTAACCCAGTCCACGCTCCGCCTAACCCAGGCCCAACTCCGTCGTACCCAGGCCCCACACCGCCTAACCCAGTCCCCGCTCCGCCTAACCCAGTTTCCACTCCGCCTAACCCAGTCTCCGCTCCGGTGGATAGGCTGCGGCAGACATTGCGCGCGAGTGGAAGTGATTCTGAAGCCAGTACTATAAGTACAGAAGGTAGTGGATTCAATATGAGATCATTAGCACACGAACAAGCGACTACAGCTCCTGTTGTCAAGTCGACTCCTGTTTTGATTCCATCTCGCACGCAGCCAATTTTTACAGAGAAAGATTTCCCTCCGTTGAGCAGTTCTGAGTCGGAGGGGCCAGGTACACCGCCGCGACAAACTACCACGAACAACAACACCAGGAAACACCAATCTCGGAATTTACAAGCCGAGGGAAGACTGGGGAGAAACGGCAGTGAGCCAGCAGCTCACGCTATGGAGCCTGGACTCCAATCCAATTCTCCTGAGTCGCACATCCGCTCGTTACAACGCGCCAACGCGCTTATGAGAGAATCCGCGTCTCTGCCCGGTCGTGGGCGCGCAGGAGCTTTATTACGTCACGCAGCTCTACCGGCGCTTCGCTTGCCCACTGAGGATGTGTCAGGCTATCATAGGTACGAACAAGCCGCTGCCGAGCGTTACGAGACTAGAAGAAACGAATTTCATTTCCCTGCTGATGATGAGCTCCTCGCTGCTCCGGAGATTGTACCAGTCCCCAGGCATCAGATCATTGGAGGGACACCAGTGAGGATCAGGCAGGCGTGA

Transcript

OS493_025999-T1

Protein

Uniprot

Uniprot term	Description
Q0P3U3	piRNA biogenesis protein EXD1 OS=Danio rerio OX=7955 GN=exd1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052144	Family	piRNA biogenesis EXD1-related protein	Interproscan
IPR025609	Domain	Lsm14-like, N-terminal	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46628	PIRNA BIOGENESIS PROTEIN EXD1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0034587	Biological Process	piRNA processing	Interproscan
GO:1990923	Cellular Component	PET complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Expression pattern

Expression trend for OS493_025999-T1 global co-expression network