Gene detail

Detailed information of OS493_029147-T1 in Lophelia pertusa

Genomic Location: scaffold_174:608885...627596
NR annotation: KAJ7325720.1, MBT domain-containing protein 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_029147-T1

ATGTTGAAGTTTTTCCAAGTGGAAAAAGTCCATTGTACGTCATCAGAGCGGCAAGCCCCTTTGAGGACTGGGCATGATCGCCAGCACGAAACCGAGGTTGGATTCTCAACGATGGCGACAGCTGAGACGCGAGAAGAGAATCAAGTCTCAGAGGAAATACCAGGGAATAATGAGACACCTTTGCCGATGAATACAGCAAAATCAGCAAAAGTTGCGGATGCCACAACAAAGCAGGAGAGTCCACTGATTACACCAATGTCGGAAGGGACAAGTATGTCGACTCCTTTACAACAAGAACAATCCAATGTCAAGGTGGATGCAGAGGATGAAAGACAAGGGGAAATTTTGGCTTTTTATGGCGAAGAGGAAACCCGTAATTATGACAGTCCAGAACCAGGTCCGGTGGTAGAGAAGGACGATGTTACCACCAAGGAAACAAAGGCATCTGTCCAGGTTAAAGAAGAACCTCCTAAGGAGGTGGTCCCAGAAGATGAACCTCTCGCTGAAAACATGGCAAAGTGTGAATTCTGCCGCTACATTGGAATAAGGGAATCCTTTTTCTCAAAGTCCAAACGCTTTTGTAAAATGGAATGTGCGAAAAGATACTCATCTGCATCCAATATTAAACAGAAGTCAAAAGGAGACAAGATTGGTACGCCTAAAAAGAAACACAGAACTTCAGACAGACATCATAAAGTTTCTTTAAAACTCGACCTTCTTTCTAACATAGTAACTGTTTTGTCCGATACAGCAAAGTGTGAATTCTGCTGCTACATTGGAATACGGGAATCCTTTTTCTCAAAGTCCAAACGCTTCTGTAAAATGGAGTGCGCAAAAAGATACTCTGCGTCGAATATTAAAAAGAAGTCGAAAGGAGAAAAGATTGGGACTCCGAAAAAGAAACACAGAACTTCAGAACGACACGCGCACAATAGTAATGCTGCGGCATCTGCTTCGGCAACAACATCTTCTTCAGCTACTATCGCAGTGACAGCTCCCAGTGTTCAAGAAACATGTCAAGGTGGGAAGGAGGAGGAGGCTGCAGTTCCCGCTGCAAGTGCAACTCCCTTGTCAAGAGAAGAGTATCTCAAGAAAACAGGAGCTAAAGCTACCGGTACCCATCTATTTGAACATGTCAGTCTAAGCCCGTGTTTGAAAGGTGTACATGTCGGCATGAAGGTGGAGGTGGTCAATTGCAGTTTGGACGTCGTTGATGATACCGATGTGGCCTTTTGGGTGGCGACAGTGATCGAGATCAAGCACTACAGAGTTCAATTACGGTATGAAGGTTACGAGTCAAACCCTGCTGGCGACTTCTGGTTTGACTTGAGATCAAAGAATATCCATCCAGTTGGTTGGTGCGCCAAGAGAAATAAACTGCTTATACCACCTCCAGCTATCAGAGAGAACTGTGCCAATTGGAGGGACTACCTGTTCAAGTGTCTCTCGGGAGCCAAGACTTTCTCAGCAGAGTTTCTACAGCAGTTACAAAGCCAACCTTACAATCGATTTCAAAAGGGCATGAAAGTTGAAGTGGCCGATCGCAAGAATATGTACTCCATGTGTGTGGCGACCATAGTGGATGTGATTGGTGACCGTCTGAGAATGCGATATGATGGGCTTGATGATGACGTTGCCGAGGACTTCTGGTGTCATTGTCAATCAGCGGAGATTCATCCTATTGGCTGGTCGTCCCTAGTGGGACACACATTACAGCCACCTATCGGTTGGAAACACAGCCTCAGCAAATGGAATGAATTCTTAGCCGATGATTTGGCAAACTCCTTAGATGCACCTCAAGAGTTCTTTGTACAGGATTCAACAGGAACAGCTCCAGGCATTCACCAGTTCAAGGTTGGCATGAAGTTCGAAGCAATCGACCCGTTTAACCCAAGCCATGTGTGTGTTGTGACGGTAATCAAGGTGCTGAGATTCAACTATTTTGTCCTGGGAGTTGATTCGCTGGCCACGTACTTTGTGTGTCACGCTAACTCAATCAATGTGTTTCCCTGTGGTTGGGCCAAGGCACATGATCTTCAGTTGCACCCACCAAGAGACTACACTCTGGATACATTCAGCTGGCCTGAATATCTTGCTAAGACGGGTGGAATCGAGGCTCCTGTTCAGCTCTTTAGACAGGACCAAAGGGGCGAGAACAACTTCACAATAGGAACCAAATTAGAAGCTGTGGATCTGCGCGAGCCTGCTCTCATCTGTCCAGCAACGGTGACAGACCTGAAGGGACCCCTGCTTAGAATCCACTTTGATGGGTGGGACGAGTCGTACGATCAGCTTGTTGATATGGACTCGTTGGACATCTTCCCTGTTAGTTACTGCGTTTCTGTGACTCATCCGCTGCAGCCTCCAGGACCAATGCCTGATAGATACGTGGAGCGATACGGCCCAGTAACTGACGTCAGCTGTCCACCAGTGCCCAGACCCCTGAGCCGGCCTGTCAAGAGACGAGCCTCGGCTGACGAGGATGGTCAGAAGAAAAAAGCCAAGTCTCTTTACCCTCAAGAAATCGTGTACATGAACAAGCGCTGTTACCTGGGACCCCTGCTCAGTCGCGACTTGATTCGGAGCCTTCCCGATGCCGTACGAGGCTCTGTGGTTGGACCGGAGAAACACAACATCATGCGACTCTGCATGCAGCACCTGGTCTCCGCGTCAATCAATCCCAAACAGGTGCTAGAGTTGTTTAGCCGAGAGTTTTACCAGAGCAAGAAAAACAGGGAGTTACAGCTTGGCGGCACAGTGTGCATTGAGACGAAAAGCAAGAATGGCAAGCGACTCATGCGTCGTGTGCGTGTCGTGAACAAAGCGGAGCATCTTGAGCCGTATCTGCAGCGAGTCTGTCAGGTGCTGGGTTGCTGTTCAGAGCTTGTCAGCGGTACTCGCTATCCTCAAGGACACTGCAATCAGATGAGCTGTCTCAAAGGAAAAGACAATGGCGTGACATCATCAAGCGATGGACGCGCCCTTCAAGAAACCGCCGTCGATGTCCCGCTGCCGACCGTTGCCGGTTACCCTCCCACTCTCAAAGGCCACCATCACTTGGCGGCCGTCTGGCTACAACCGATGGAGAGAGAGTCATCGCACGATTCAATGGTGTCTTCTACGAGTAATCTACCTTCGTCTGCTGTGCAGGAGACGGACGCTGCTTCGGTTCTCCTGTACCAGAGCTGTAACAGCGGTAAAGATCCTCGCCTGTGGAACGTGCAGGAGGTGACGGGCTTCATGTACTCTATCGGCTGCTCGAATTACGCGGATGCCTTTGTTAAAGAGGAGATCGACGGTCGCGCGCTTCTGTTACTGACGCAAGAAATGTTGGAATCGTTAACAGAGAACAAACTGGGGCCCATGACGAAAATCCAGAGCGCGGTCAAGGCTCTCAAACAGGCGTGGGGCATATGA

Transcript

OS493_029147-T1

Protein

Uniprot

Uniprot term	Description
Q32N90	MBT domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=mbtd1 PE=2 SV=1
Q6DIN3	MBT domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=mbtd1 PE=2 SV=1
Q6P5G3	MBT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Mbtd1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12140	SLED	SLED domain	Domain	Interproscan
PF21319	zf-FCS_1	Zinc finger, FCS-type	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02820	MBT	mbt repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004092	Repeat	Mbt repeat	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR012313	Domain	Zinc finger, FCS-type	Interproscan
IPR038348	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR021987	Domain	SLED domain	Interproscan
IPR038603	Homologous_superfamily	FCS-type zinc finger superfamily	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26269	SFMBT; scm-like with four MBT domains protein	-	Chromosome and associated proteins	ko03036	deepkoala

Expression pattern

Expression trend for OS493_029147-T1 global co-expression network