Detailed information of OS493_031059-T1 in Lophelia pertusa

Genomic Location: scaffold_208:684288...685233
NR annotation: KAJ7370644.1, Collagen alpha-2(IV) chain [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
P02463Collagen alpha-1(IV) chain OS=Mus musculus OX=10090 GN=Col4a1 PE=1 SV=4
Q7SIB2Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR019326FamilyProtein NDNFInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14619NEURON-DERIVED NEUROTROPHIC FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan

Expression pattern
 Expression trend for OS493_031059-T1 global co-expression network
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