Gene detail

Detailed information of OS493_032176-T1 in Lophelia pertusa

Genomic Location: scaffold_235:179298...183456
NR annotation: KAJ7389322.1, hypothetical protein OS493_032176 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_032176-T1

ATGAGCACTCTAAGCGCCCGTCAGCTTGGGATGTGGCAGAGGATTCTTCTAAGTGTAGCATTTTGTCAAACACTAGTTATTCAGTGTGGATCAGCTACGGATTTAGATGGACCCCGAGATACTTACGAGGGCGACGACTGCTTAAAACGGGTTAAGGAGTTGCCCGCATTCAGGCCGGATACCACTTTTACGCCAAAAGATGAAAGAGAGGTTTTGTTGGACATCTACGCATCCACAAATGGACAACAGTGGTTCAATACCAGCGGATGGATGAATTCACCGAAAGAAACATCTCACTGTTCATGGTATGGTATCACCTGCCACAATAACACATCATATATCAAAGCTGTTGTATTGGCGTACAACAATTTGGACGGGCGTCTTCCTTCGAATCTTTGGAAAATACGCAACTTATTGTCCTTGTGTACTCCTGGCAACCCAAGACTGCGGGGCCGCATTGGCGACTTTTTGTTTGGAAATATGAGCAAACTACTGACAGTCGTGTTCAATGCAGCCTCTATTGCTGGAAATATTCCTGAAGATCTCGCTCAACTGAGAAGTCTCCAAAACTTCCAGGGCTGTAACATGGACGGCGAAGGCTTCACTGGCCGTTTACCAGAAGACATAGGAAACATGACAGAGCTAAGAGCACTGTGTCTCGGAGGAAATAGCCTAACTGGACAAATACCTAGAAGCATTTCCAGATTAAAGAAGCTTTGGTGGCTTGACCTAACAAACAATCCTGGCATGATGCATGGAAACCTAAGTGACATATTTGAGATTCCCTCGTTATCCCGCTTAGTCATATCTGGGGTTAAATTAATAGGACAGATGCCTCGTGTTATGCCAGGATCATTAAAAACCCTTGTTTTACCTGGAAACATGATTTCGGGAACGTTCTCGGAAACATTTACGGAAGAAAGCAACCTGAAAATGCTAAACATGGCCAATAATCAGCTGACAGGAGATATCCCAGGTAAATTGCTTCTTTTACCAAACATTACCACCATCAATTTATCGCAGAACCTGTTTTCTTCAATTAACAAAGGGAAGGCTTGGCCACATTTTATCACGGCGGCGGCTAAATTATACGTTTCTTTGGCGGGAAATCGGAATTTGTCAATACATTTTTCAAGCTTCATGAACCTTTTTACAAGAAGAGTTGACTCTGTAGTTCTCAGTCCAACAATTTTAAATATAAGTTTTTGCGACATAAAAAGTCCTGTACTTGGAGTAACGTTTTTCTTGAATAGACTATCCACTTGTGATTTACGTGGAAACAGGTTTTATGGTGTGATACCCAATATTCGTTCCGACACCTCAATTCTAACCTATTTTGATCTTTCCTCAAATAATTTGTCGGGTGGTCTTCCAGTAGGATTTCAAAATCTCGTCTACCTACAATATTTTGATATTTCTGGAAATCCTTCCATGCGAAAAAGAACTACTGCAACGTCCGGTGTCTTCCGTCCAGACTTTTCAAGAATGGTTAGACCACCTCAAGGAGACAACTTTACTTGTCCTGAAGGACGACTTACATTCAACAATGGCTGCATTCGCTTGGATCCGACATTTTACGAATACAGACATTGCATCTGCGATGCAGATTTTTACGGAGAGATCGGATTGTGCAAGAAATGCATGGACGGTGGGACGTGTATTCAACCAACTGTCACTTGGTCAGAAGATATCCGCCCAAACATCGTGAAGATACACACTGGCTATTGGCCATCACCTCATCCTCAAAACGCCACCCATCTTGTGAAGTGTCCAGTGTCATCTGCATGTAATCCATCAAATTCCTGCACCTGTCGCCTCGACACAACACAACAAGACACAAACTGCACCCGTTACAGACCATCAGTGTCATCTCTGATTACCACATGCAACCTATCCTGTATCTGTCATCCTGGAAACACAGACAGATTTTGCTCTCGTTGTAAAGACCGATTTTACAAAATTGGTGGACTGTGCTTCCGATGTACAAAAGGCGACCTAACTTATTATTATTTGTTTATTCCTATCTTTGCTGTGTCTTTTGTTGTTTTACTTTGGTCATATTTTCATTTTAAACTGCGACCTATCAAATGGTTTGCTGTTACGGCGGTTCATTTTCTCTTGATGTTAATCTTTATGTTGTTGGAATTGCTACCCGCCTGGGTTTTCAAATTGAATCTGGTGGTTTTTTGTGTTGTGTATGACCAGTCGAAGTAA

Transcript

OS493_032176-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF08263	LRRNT_2	Leucine rich repeat N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR013210	Domain	Leucine-rich repeat-containing N-terminal, plant-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45974	RECEPTOR-LIKE PROTEIN 55	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06838	SLIT1; slit 1	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Expression pattern

Expression trend for OS493_032176-T1 global co-expression network